PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015880093.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 410aa MW: 47820.8 Da PI: 8.7665

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015880093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.4	1.7e-16	7	93	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAke+GFsvr s++k+ k +e+++++f keg ++ ++ + ++r r tr +Ckakl v ++k+gk ++t +++e +H+l+ XP_015880093.1 7 EFYIKYAKEAGFSVRSSSTKRCKGAKEVVRKEFLYFKEGVSSIKDGE---RKRCRGMTRENCKAKLAVVRSKTGKLVITVFVEEQSHPLS 93 6***************************************99877...99999*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-14	7	93	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-32	214	307	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MINGAHEFYI KYAKEAGFSV RSSSTKRCKG AKEVVRKEFL YFKEGVSSIK DGERKRCRGM 60 TRENCKAKLA VVRSKTGKLV ITVFVEEQSH PLSTPRRVHL LRSHRSVFEA KKSLTLQFSA 120 DDVPTYQQIS ILEFEAGGIE NIRCTKKDIY NHEAKVRNEL RGQDAELLKE YFLTEQEKDP 180 CFFFKIDVDD DGKLKRCFWA DSVSRRAYGC FGDVVVFDTT YNTNQYGMIF APLVGVNNHG 240 QTVLFACAFL SDEKTESFVW LFELLKDSMP TNNPKMIITD QDPVMTKAIV QSLPNTFHRY 300 CSWHILEKFS TYLNAITYRD FYKDFQQCIW ESECPEEFER KWVTTIEKAS LDNNDWLKSI 360 FKLCSRWVLA YVNHIFLAGM SRYSQLECQV ANVRKAPMHF SRNMFRRATY

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MINGAHEFYI KYAKEAGFSV RSSSTKRCKG AKEVVRKEFL YFKEGVSSIK DGERKRCRGM  60
TRENCKAKLA VVRSKTGKLV ITVFVEEQSH PLSTPRRVHL LRSHRSVFEA KKSLTLQFSA  120
DDVPTYQQIS ILEFEAGGIE NIRCTKKDIY NHEAKVRNEL RGQDAELLKE YFLTEQEKDP  180
CFFFKIDVDD DGKLKRCFWA DSVSRRAYGC FGDVVVFDTT YNTNQYGMIF APLVGVNNHG  240
QTVLFACAFL SDEKTESFVW LFELLKDSMP TNNPKMIITD QDPVMTKAIV QSLPNTFHRY  300
CSWHILEKFS TYLNAITYRD FYKDFQQCIW ESECPEEFER KWVTTIEKAS LDNNDWLKSI  360
FKLCSRWVLA YVNHIFLAGM SRYSQLECQV ANVRKAPMHF SRNMFRRATY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015880093.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015866451.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067D5X9	1e-166	A0A067D5X9_CITSI; Uncharacterized protein
STRING	XP_008365955.1	1e-141	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-76	FAR1-related sequence 5