PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880037.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 368aa    MW: 40744.2 Da    PI: 7.0581
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880037.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.53e-15289314126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tGtC+yGd C+FaHg
  XP_015880037.1 289 FKTELCNKWQETGTCPYGDHCQFAHG 314
                     79***********************8 PP
2zf-CCCH18.34.2e-06327352126
                     --S---SGGGGTS..--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                     ykte Cr  + +G   C+yG rC+F H+
  XP_015880037.1 327 YKTEVCR--MVMGgdRCPYGHRCHFRHS 352
                     9******..888889**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.5E-19283320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-11285320IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.295288316IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-12289314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-12321355IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8322357IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.08326354IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4326353IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
METEALSASA PSETNTASTN SSPHDLFSQI STYSNFPAPS QENGRDFGAD FASMYRAIFP  60
PNFPSSLSLT PSTTHSSSCG EDEAAVTEHR LNQACLILEC QELRDGFDLC RANLHEITKE  120
VEYLRRENSE LRSANTELVK LLSSQTTFQS VLLSSSYPNR SFMQNFRRLN IGGTTAPNAH  180
GSEEVSNISP TSVMENNRFQ RRSNTERINL PKSISVRSSG YPKLNQSASA SNVDGPSRIS  240
TRPQVTGPLV SGSQRVYVPA GCGSGSGKRD QDSEGGGDLE LEVYNQGMFK TELCNKWQET  300
GTCPYGDHCQ FAHGIKELRP IIRHPRYKTE VCRMVMGGDR CPYGHRCHFR HSLTEQERVQ  360
LMGLPRAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-21289355470Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880037.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880037.10.0zinc finger CCCH domain-containing protein 14 isoform X2
SwissprotQ9C9F55e-73C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2P5BKC31e-133A0A2P5BKC3_TREOI; Zinc finger, CCCH-type
STRINGXP_010108899.11e-130(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-75C3H family protein