PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015880036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 370aa MW: 40971.4 Da PI: 7.0581 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.4 | 3e-15 | 291 | 316 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg XP_015880036.1 291 FKTELCNKWQETGTCPYGDHCQFAHG 316 79***********************8 PP | |||||||
2 | zf-CCCH | 18.3 | 4.2e-06 | 329 | 354 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 ykte Cr + +G C+yG rC+F H+ XP_015880036.1 329 YKTEVCR--MVMGgdRCPYGHRCHFRHS 354 9******..888889**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-19 | 285 | 322 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-11 | 287 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-9 | 290 | 317 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.295 | 290 | 318 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-12 | 291 | 316 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-12 | 323 | 357 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-8 | 324 | 359 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 328 | 355 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.08 | 328 | 356 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
METEALSASA PSETNTASTN SSPHDLFSQI STYSNFPAPS QENGRDFGAD FASMYRAIFP 60 PNFPSSLSLT PSTTHSSSCG EDEAAVTEHR LNQACLILEC QELRDGFDLC RANLHEITKE 120 VEYLRRENSE LRSANTELVK LLSSQTTFQS VLLSSSYPNR SFMQNFRRLN IGGTTAPNAH 180 GSEEVSNISP TSVMENNRFQ RRSNTERINL PKSISVRSSG YPKLNQSASA SNVDGPSRIS 240 TRPQVTGPLV SGSVQQRVYV PAGCGSGSGK RDQDSEGGGD LELEVYNQGM FKTELCNKWQ 300 ETGTCPYGDH CQFAHGIKEL RPIIRHPRYK TEVCRMVMGG DRCPYGHRCH FRHSLTEQER 360 VQLMGLPRAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 4e-21 | 291 | 357 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015880036.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015880036.1 | 0.0 | zinc finger CCCH domain-containing protein 14 isoform X1 | ||||
Refseq | XP_024928234.1 | 0.0 | zinc finger CCCH domain-containing protein 14 isoform X1 | ||||
Refseq | XP_024928235.1 | 0.0 | zinc finger CCCH domain-containing protein 14 isoform X1 | ||||
Swissprot | Q9C9F5 | 4e-72 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A2P5BKC3 | 1e-131 | A0A2P5BKC3_TREOI; Zinc finger, CCCH-type | ||||
STRING | XP_010108899.1 | 1e-132 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 3e-74 | C3H family protein |