PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015880028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 346aa MW: 39642.8 Da PI: 7.8597 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.8 | 2.5e-17 | 4 | 45 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i ++ r++tf kR+ g+lKK +E S+LC+++v++ii+++++ XP_015880028.1 4 IADEKSRKITFQKRKRGMLKKCYEFSILCGIDVCMIIYGPKQ 45 788999*********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.32E-16 | 1 | 90 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-8 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.65E-18 | 1 | 43 | No hit | No description |
PROSITE profile | PS50066 | 15.418 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-17 | 4 | 44 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MELIADEKSR KITFQKRKRG MLKKCYEFSI LCGIDVCMII YGPKQIERPT ELIIYPDDST 60 QVACIIKQLQ TTTIYKPPKR IFNLSDIFID RKRKIDTEIT KLRKVYFATK YPISDELINS 120 LSRDQLNFLL SRLDTKIEDA KAMIDLHKEN DLLLMKNPVG QNCANHVQNI FHDQKPAIPL 180 NHHHHHHPVV DHMQLPLQVL LNRTTPPPKM VPPPCFDSNP NPAINIAMKN PLTMMMLMND 240 QAGLENGASS SNIIDNHQFI SSSSNNHLCG PVFNDPTLGM IDNMMFSNMG GQYSQLVQVQ 300 QPMPYIQYNQ TVNAAAGIHS QRIYGSDEGN RFDDEFSEFL YKNKIL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015880028.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015880028.1 | 0.0 | MADS-box protein FBP24-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 1e-18 | AGAMOUS-like 82 |