PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015880025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NF-YC | ||||||||
Protein Properties | Length: 103aa MW: 11863.4 Da PI: 8.5021 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 29.5 | 1.6e-09 | 56 | 96 | 2 | 38 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkm 38 l+ fw++q + + + +k +++lPlarik+++k+d dvk+ XP_015880025.1 56 LELFWNQQnyeMRNGSVVKsQNQLPLARIKRVMKSDGDVKV 96 789***9987777777788789*****************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.02E-5 | 13 | 95 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.2E-6 | 74 | 95 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MNPSRNFRSS NPNHRNPNVL PMGSLMLPYP PPLTTNIEDA EESSESQFDQ LQKHNLELFW 60 NQQNYEMRNG SVVKSQNQLP LARIKRVMKS DGDVKVAFLL CSF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015880025.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015880025.1 | 2e-71 | nuclear transcription factor Y subunit C-1-like | ||||
TrEMBL | W9SQ52 | 2e-20 | W9SQ52_9ROSA; Nuclear transcription factor Y subunit C-2 | ||||
STRING | XP_010108900.1 | 3e-21 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 8e-07 | nuclear factor Y, subunit C4 |