PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015879984.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | SBP | ||||||||
Protein Properties | Length: 1059aa MW: 117174 Da PI: 8.4968 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.6 | 1.1e-40 | 149 | 226 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hsk++++lv++++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ XP_015879984.1 149 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVAKQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQP 226 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.0E-34 | 142 | 211 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.778 | 147 | 224 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.05E-37 | 148 | 228 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.7E-29 | 150 | 223 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 5.86E-5 | 862 | 959 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.76E-4 | 862 | 956 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1059 aa Download sequence Send to blast |
MEEVAQVASP IFIHQTLSSR YCDAPAMARK RDLLYQTPNF QQQRFANPGD SWSPKVWEWD 60 SLRFLAKPVD AEALRLGSST AATPEQKKRG EVSSGSGSGS GSTLKKNSAG EDDDSLRLNL 120 GGGLACVEEP VSRPNKRVRS GSPGATYPMC QVDNCKEDLS NAKDYHRRHK VCELHSKSTK 180 ALVAKQMQRF CQQCSRFHPL TEFDEGKRSC RRRLAGHNRR RRKTQPEDVT SRLVLPGERD 240 NKSNGHLELF NLLAAVARAQ GKNEDKSINA SLPDREQLLQ ILTKINSLPL PVDLAAKLPN 300 LGSLNRKLSE QTALDHQVLL KGRSSPSTMD LLTVLSATLK SSAPDALPVV SQRSSQSSDS 360 EKTKLNCPDQ ATCPNLQKRP QEFPSVGGER SSTSYQSPME DSDCQVQETR VNLPLQLFAS 420 PSENDSMPKL ASSRKYFSSD SSNPIEERSP SSSPPVVQKL FPMQTMAEAV KSEKTSIGRE 480 VNATVDSSRS HGCNMPFDLF RGADTGSIQS FPYQAGYTSS GSDHSPSSLN SDAQDRTGRI 540 IFKLFDKDPS HFPATLRAQI YNWLSNSPSE MESYIRPGCV VLSIYVSMPS VAWEQLQENL 600 LQSISSLVQS SDSDFWRNGR FLVHAGRHLA SYKDGKFRLR KSWRTWNSPE LISVSPLAVV 660 GGQETSLVLK GRNLSNLGTE IHCTCMGGGY TSKKIMGSTY HGTMYEEINL GGFRVQDASP 720 GVLGRFFIEV ENGFKGNSFP VIVADASICD ELRVLESVFD GEGKLCDIIS EDQNHDYGSP 780 RSKEEAIHFL NELGWLFQRK RTSSLLNGPD YSLGRFKFLL TFSVERNCSA LVKTVLDILV 840 ERNLHETGLS RESVEMLTEI QPLNRAVKRR CRKMVDLLVH YFVIGSGDTS KRYIFPPNIA 900 GPGGITPLHL AACMSGSDDV VDALTNDPQE IGLNCWNNLL DANRQSPHAY ALMTNNQSYN 960 KLVTRKLAHR RKDQVTVTIE NDTSTELKQG GRSCARCAVA ATKYSRRVPG SQGLLTRPYI 1020 HSMLAIAAVC VCVCLFLRGS PDIGLVAPFK WENLDFGTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-30 | 140 | 223 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 864 | 869 | RAVKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015879984.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015867006.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Refseq | XP_015879984.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A251P2S5 | 0.0 | A0A251P2S5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008237887.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9694 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Publications ? help Back to Top | |||
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