PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015879934.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NAC

Protein Properties

Length: 688aa MW: 78798.1 Da PI: 6.0865

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015879934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.8	1.7e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+k++l e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v XP_015879934.1 6 LPPGFRFHPTDEELVAYYLKRKINGRKIDL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVN 99 79**************************.99***********6434555777*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++ vg+kktLv+y+grap+g +tdWvmheyrl XP_015879934.1 100 S-QTRSVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 .9999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.835	6	156	IPR003441	NAC domain
Pfam	PF02365	4.4E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRSVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECET ASGLQDAYAL CRVFKKSATG PKIGETYATT STTSNHLLHH 180 HHHQLQSDRS SSIELYSDGR CDDFESSNYQ MQSDTCSPSM LTRSSPLDHM INNRRDLRWS 240 HSHFPSEDPF NFTNPSFPNC GSMSYAPSKV DIALQCARLQ HRLALPPLEV EDFPQVGMTM 300 QATQHENANE TDILQEILSV AHVSQELINN QSNFGHTWGG NYAQPDHDFT FAVGKDGTDY 360 NQINDMDSMR SSWADPHART IEIADLEDEF RTERKIENLR WVGMSNEEVE KSFMEEHKVI 420 PFDNISTFRR EEHEDIQGDQ SGHHSSSKEH NDTETNDFSL EFINSEPDHE NFIDDSNMNA 480 YSSSPSFEVV EEIKVNHGLF VSTRQVAETF FHQLVPSETV KVYLNPVFAN NFLVEKKVNT 540 EIASQNNEDS FFRKLKTFSE LKFEEISNKT TKPWWKISSS IICSLSLALL LMHHICFGED 600 MEKDQKLMDS FPEGGGRVLE EKSSDCSNNI VNGRKRIGII KKWCNNREEK VTLVNIRGGN 660 GFVVFLKKIG IFLTISLALC TICGLTTI

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRSVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECET ASGLQDAYAL CRVFKKSATG PKIGETYATT STTSNHLLHH  180
HHHQLQSDRS SSIELYSDGR CDDFESSNYQ MQSDTCSPSM LTRSSPLDHM INNRRDLRWS  240
HSHFPSEDPF NFTNPSFPNC GSMSYAPSKV DIALQCARLQ HRLALPPLEV EDFPQVGMTM  300
QATQHENANE TDILQEILSV AHVSQELINN QSNFGHTWGG NYAQPDHDFT FAVGKDGTDY  360
NQINDMDSMR SSWADPHART IEIADLEDEF RTERKIENLR WVGMSNEEVE KSFMEEHKVI  420
PFDNISTFRR EEHEDIQGDQ SGHHSSSKEH NDTETNDFSL EFINSEPDHE NFIDDSNMNA  480
YSSSPSFEVV EEIKVNHGLF VSTRQVAETF FHQLVPSETV KVYLNPVFAN NFLVEKKVNT  540
EIASQNNEDS FFRKLKTFSE LKFEEISNKT TKPWWKISSS IICSLSLALL LMHHICFGED  600
MEKDQKLMDS FPEGGGRVLE EKSSDCSNNI VNGRKRIGII KKWCNNREEK VTLVNIRGGN  660
GFVVFLKKIG IFLTISLALC TICGLTTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-56	1	162	15	174	NAC domain-containing protein 19
3swm_B	2e-56	1	162	15	174	NAC domain-containing protein 19
3swm_C	2e-56	1	162	15	174	NAC domain-containing protein 19
3swm_D	2e-56	1	162	15	174	NAC domain-containing protein 19
3swp_A	2e-56	1	162	15	174	NAC domain-containing protein 19
3swp_B	2e-56	1	162	15	174	NAC domain-containing protein 19
3swp_C	2e-56	1	162	15	174	NAC domain-containing protein 19
3swp_D	2e-56	1	162	15	174	NAC domain-containing protein 19
3ulx_A	1e-56	2	156	11	168	Stress-induced transcription factor NAC1
4dul_A	1e-56	1	162	12	171	NAC domain-containing protein 19
4dul_B	1e-56	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015879934.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015879934.2	0.0	LOW QUALITY PROTEIN: NAC domain-containing protein 86
TrEMBL	M5XAW6	0.0	M5XAW6_PRUPE; Uncharacterized protein
STRING	EMJ16200	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-163	NAC domain containing protein 28