PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015879676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ARF | ||||||||
Protein Properties | Length: 850aa MW: 95151.5 Da PI: 6.5558 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.6e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_015879676.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfaQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218 99*****************************8554444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_015879676.1 219 KNQLLLGIRRA 229 9999****997 PP | |||||||
2 | Auxin_resp | 117 | 1.6e-38 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +t+s F+v+YnPras+seFv++++k+ ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k XP_015879676.1 254 AAHASATNSCFTVFYNPRASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSIK 337 799******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-49 | 112 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-41 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.63E-21 | 127 | 228 | No hit | No description |
SMART | SM01019 | 1.6E-23 | 128 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.28 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-21 | 128 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.4E-34 | 254 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.4E-7 | 562 | 807 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 5.36E-7 | 718 | 797 | No hit | No description |
PROSITE profile | PS51745 | 23.691 | 723 | 807 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 850 aa Download sequence Send to blast |
MKLSTSGLGQ QDHEGGEKKC LNSELWHACA GPLVSLPSPG TRVVYFPQGH SEQVAATTNK 60 EVDGHIPNYP SLPPQLFCQL HNVTMHADVE TDEVYAQLTL QPLTPQEQKD TFLPMELGIP 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFA QQPPAQELIA RDLHDVEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV 240 LSSDSMHIGL LAAAAHASAT NSCFTVFYNP RASPSEFVIP LSKYIKAVFH TRVSVGMRFR 300 MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSIKVGW DESTAGERQP RVSLWEIEPL 360 TTFPMYPSLF PLRLKRPWHP GASSIHDNRD EAANSLMWLR GGTADQGLHS LNFPAVNMFP 420 WMQQRLDPTL MATDHGQQYQ AMLATGLQNV GSGDPLRQQM MHFQQPFHYL QQSGSHSHNN 480 PLLQLQHQQI SHNMPQTQTH ISNENLSPHH LLPQQFNNQA EEHAATQQQQ QQQQHTYHDA 540 LQIQSEQLHQ RQQLNVPSSS IPKTDFLDSS TKFSASMTTP RQNVLGSLCP EGSGNLLNLT 600 RDGQSLIPDQ LPQQSWTTKY AHPQVNAFAN SMSLPPYPGK ETTMGQENSN SDSQNPTRYV 660 VNVESSGLLL PTVVPSFATS SNADVSSMPL GDSGYRSSLY NSMQDSSETL HGTEQIDTPN 720 PARTFVKVYK SGSVGRSLDI SRFSSYHELR EELAQMFGIE GKLEEPLRSG WQLVFVDREN 780 DVLLLGDDPW EAFVNNVWYI KILSPEDMHK MGEQAVESFS PNAGQRMNSS GGGDSQDHLS 840 GLPSYGSREY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 11 | 358 | 41 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015879676.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015879676.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A314ZKI1 | 0.0 | A0A314ZKI1_PRUYE; Auxin response factor | ||||
STRING | XP_008343153.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |