PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879620.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 649aa    MW: 71558.7 Da    PI: 6.5949
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879620.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.7e-192176156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t +q++ Le++F+++++p++++r++L+++l+L+++q+k+WFqN+R++ k
  XP_015879620.1 21 KKSYHRHTVQQIQHLEAFFKECPHPDENQRRQLSRELSLETKQIKFWFQNKRTQTK 76
                    688899***********************************************998 PP
2START140.12.2e-441593803206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a ++++elvk+   ++p+Wv+s+        +d + ++f++s+       ++e +++sg+v+m++++lv  ++d++ +W   ++    + +t++v
  XP_015879620.1 159 AASTMEELVKLLRIDDPLWVQSPvdgrCTIHRDSYEKIFPRSNHfktssARMESSKDSGMVIMNAMQLVDMFMDTS-KWLDLFPtlitDSKTIQV 252
                     67899******************9987566788888999888889999999*************************.****9999999******* PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                     +++g      gal lm+ ++  lsplv+ R+++++R+++q + g+wvi+ vS d   +   s s  R+ +lpSg++i++ sng skvtwvehv++
  XP_015879620.1 253 LEPGmlgnknGALLLMYEQMHILSPLVAqREYYILRHCQQIEPGVWVIANVSYDCSINE--SVSPLRSWKLPSGCMIQEISNGCSKVTWVEHVEV 345
                     *****************************************************987776..5699****************************** PP

                     -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++++  h l+r lv s++a ga +w  tlq+ ce+
  XP_015879620.1 346 DDKTQtHRLYRDLVCSSIAYGAERWIVTLQKMCER 380
                     **9998***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-181078IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-201178IPR009057Homeodomain-like
PROSITE profilePS5007116.6331878IPR001356Homeobox domain
SMARTSM003899.1E-162082IPR001356Homeobox domain
CDDcd000863.75E-172179No hitNo description
PfamPF000462.5E-162176IPR001356Homeobox domain
PROSITE patternPS0002705376IPR017970Homeobox, conserved site
PROSITE profilePS5084843.275148383IPR002913START domain
SuperFamilySSF559613.43E-33149381No hitNo description
CDDcd088751.98E-104152379No hitNo description
SMARTSM002348.1E-36157380IPR002913START domain
PfamPF018521.3E-37159380IPR002913START domain
Gene3DG3DSA:3.30.530.209.7E-9159375IPR023393START-like domain
SuperFamilySSF559617.14E-13399622No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MEFAVGCDGD EHDASSSRKG KKSYHRHTVQ QIQHLEAFFK ECPHPDENQR RQLSRELSLE  60
TKQIKFWFQN KRTQTKHEKV SNLLAKYIGK PISQIESLAA AQGLTVDLDL GGSSLNQGIG  120
GPGLDLDLTS GGGFASNRAF PYHFRAIPDM EKALMAETAA STMEELVKLL RIDDPLWVQS  180
PVDGRCTIHR DSYEKIFPRS NHFKTSSARM ESSKDSGMVI MNAMQLVDMF MDTSKWLDLF  240
PTLITDSKTI QVLEPGMLGN KNGALLLMYE QMHILSPLVA QREYYILRHC QQIEPGVWVI  300
ANVSYDCSIN ESVSPLRSWK LPSGCMIQEI SNGCSKVTWV EHVEVDDKTQ THRLYRDLVC  360
SSIAYGAERW IVTLQKMCER IACSLAESSP PCEFGVITLP EGRKSIMKLS HRMVKNFCAI  420
LSMSGKMDFP QLSEVNNSGV RVSVRNNTEP GQPIGTIVSA ATSLWLPLPP QNVFDFFKDG  480
KTRVQWDVLS NGNPVHEIAH ISIGTHPGNC ITIIRPFIPT ENNILMLQES CIDSLGSMVI  540
YAPIDIPALN VAISGEDSST IPILPSGFIV SNDGRTTDHD AAITGSSAST SSNTNGRSGG  600
SLLTVAFQIL VSSPSSSKQL NMESVATVNT LISSTVQKIK VALNCSTLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015879620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649213.10.0PREDICTED: homeobox-leucine zipper protein ROC8
TrEMBLA0A2N9ICH70.0A0A2N9ICH7_FAGSY; Uncharacterized protein
STRINGXP_008227910.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11