PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015879458.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 347aa MW: 37893.2 Da PI: 7.4589 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 111.4 | 4.8e-35 | 62 | 119 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeC+kNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+ee XP_015879458.1 62 VVTYKECQKNHAASLGGHALDGCGEFMPSPTATqTDPTSLKCAACGCHRNFHRREPEE 119 589***************************99989*******************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.4E-29 | 63 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-23 | 63 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.3E-32 | 64 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.084 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.21E-18 | 204 | 275 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-29 | 206 | 276 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.7E-24 | 214 | 271 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MDITPTVTTT TNNTASTKSP EADSETPTRI QPAKPLAFSN GILKRHNPHH HHHHHLPNTP 60 VVVTYKECQK NHAASLGGHA LDGCGEFMPS PTATQTDPTS LKCAACGCHR NFHRREPEEP 120 LPPPANTTHV IEYQPHHRHH PPPPPPPHAG NRSPNSSSPP PISSSYYPSA PHMLLALSTG 180 LSGPQHQDNA GGGGIGVTNT GMVTPGSGGR QSTRKRFRTK FSQDQKERMH QFAERVGWKM 240 QKRDEEIVQE FCNEIGVEKG TLKVWMHNNK NTFGKKDVNG TGSTGRNVVE QIHNNGSNND 300 KNENTNNNSE NNDDDDDNNN NSQSPNHNYQ DDHGVAHVAT NGSSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-20 | 213 | 272 | 16 | 75 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015879458.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015879458.1 | 0.0 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LXG0 | 1e-77 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A2P5D1Z1 | 1e-131 | A0A2P5D1Z1_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_004304301.1 | 1e-114 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 3e-70 | homeobox protein 34 |
Publications ? help Back to Top | |||
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