PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015879415.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 401aa MW: 45307 Da PI: 7.1139 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.9 | 6.9e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k++ ++l++ e ik+vdiyk++PwdLp+ ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ XP_015879415.1 14 MLPGFRFHPTDEELVGFYLKRKIQLRPLPI-ELIKQVDIYKYDPWDLPRLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107 579***************************.89***************8888899***************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +glkk+Lvfy+gra kg ktdW+mhe+rl XP_015879415.1 108 dGAKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141 55566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-57 | 13 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.118 | 14 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MDEKNEMDKI DDVMLPGFRF HPTDEELVGF YLKRKIQLRP LPIELIKQVD IYKYDPWDLP 60 RLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGA KCIGLKKSLV 120 FYRGRAAKGI KTDWMMHEFR LPSIPESPPK KLSDKSFPAH DSWAICRIFK KTNSMAQRAL 180 SHSWATPLPE ISAPGLLTQA THCTQFSPEN ISCTTEIRSA LQFYSNNDLQ QNSTTTYSAS 240 DIPPSYKPNN LEICKPGNFP FSNEEIPNSY VFPGMEMSEP TKSSVDVASM LFNTGLIGNG 300 RNNPSESIHF ESQHQQFRGF SVNLAQNMQG NDIGTGEDDG EAGLKKDPRV AQVDNQCEAI 360 RSIGFPFSLS PNDAWKPNLP WDSPPCPSEM STSYSTNKCY T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-51 | 5 | 174 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-51 | 5 | 174 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-51 | 5 | 174 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-51 | 5 | 174 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-51 | 5 | 174 | 10 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-51 | 5 | 174 | 10 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-51 | 5 | 174 | 10 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-51 | 5 | 174 | 10 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-51 | 5 | 174 | 10 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-51 | 5 | 174 | 10 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-51 | 5 | 174 | 10 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-51 | 5 | 174 | 10 | 171 | NAC domain-containing protein 19 |
3ulx_A | 2e-51 | 1 | 174 | 1 | 171 | Stress-induced transcription factor NAC1 |
4dul_A | 1e-51 | 5 | 174 | 7 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-51 | 5 | 174 | 7 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015879415.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015879415.1 | 0.0 | protein FEZ | ||||
Swissprot | Q9ZVH0 | 4e-98 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A2N9FZV1 | 0.0 | A0A2N9FZV1_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0017s11830.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-100 | NAC family protein |
Publications ? help Back to Top | |||
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