PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878976.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CO-like
Protein Properties Length: 369aa    MW: 39717.3 Da    PI: 6.3026
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878976.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69e-072161438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    + C+ +++  ++ fC+ ++ +lC  C  ++H        H+
  XP_015878976.1 21 KPCDSCKSAAASVFCRPDSAFLCLACDAKIHCAnklasrHE 61
                    68****************************95545666665 PP
2zf-B_box27.37.7e-0962108242
        zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     + ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  XP_015878976.1  62 RVWICEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 108
                     5689*****************************66899999999986 PP
3CCT69.77.3e-24299342144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_015878976.1 299 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 342
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.3E-121865IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3241865IPR000315B-box-type zinc finger
CDDcd000217.80E-92265No hitNo description
PROSITE profilePS5011910.79361108IPR000315B-box-type zinc finger
PfamPF006438.5E-762108IPR000315B-box-type zinc finger
CDDcd000211.14E-864108No hitNo description
SMARTSM003363.1E-1066108IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787299341IPR010402CCT domain
PfamPF062035.6E-18299341IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGIQSGESLR GFGGGWSVAA KPCDSCKSAA ASVFCRPDSA FLCLACDAKI HCANKLASRH  60
ERVWICEVCE QAPAAVTCKA DAAALCVTCD ADIHSANPLA RRHERVPVEP FLDSADSIVK  120
SSAINFLSSN GAGSDDTGGG ACRHEEAEAV SWILPNPNFS SKLMDGPDVK SSGELFFSEM  180
DSFLDFDYPN PVHHSSGTDS VVPVQTKPFA PPSVINQSSE NCFDIDFCRS KLSSFNYPAQ  240
SLSQSVSSSS LDVGVVPDGN SMSDTSYSFG ANVNHNGADP SVSVCATAAQ ATQLCGIDRE  300
ARVLRYREKR KNRKFEKTIR YASRKAYAET RPRIKGRFAK RTEIDTDVDR IYGAPAAFID  360
SQYGVVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878976.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024928544.10.0zinc finger protein CONSTANS-LIKE 5
RefseqXP_024928545.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-121COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A4D6L0961e-176A0A4D6L096_VIGUN; Zinc finger protein CONSTANS
STRINGXP_004167377.11e-174(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-115CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]