PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015878794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 31558.4 Da PI: 8.2586 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +g+WvAeI+d k+ r +lg++ taeeAa+a+++a+ l+g XP_015878794.1 34 KFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTYNTAEEAARAYDEAAFLLRG 83 799******.7*********33....36**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-36 | 34 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.67E-32 | 34 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.7E-28 | 34 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-13 | 34 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.31 | 34 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-20 | 34 | 92 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MERHCHSQER QKGVLANKKS NYFKERTTHN YKNKFVGVRQ RPSGKWVAEI KDTTKKIRMW 60 LGTYNTAEEA ARAYDEAAFL LRGSNTRTNF AIHVSTNSPL SLKIRNLLNY KKGPSKQAAS 120 TTNIIKPSIK PSTVISSSTS ITNNPTGYSF HYNAGTSFTS PSACKNVYGQ MFEDAYKPDM 180 SYCIEELQQA TPYLDYSWPC SVGFDHQLQL NHEGTELVKG FDLSSNKAEL ELTEMELSKV 240 ERQISASLYG VNECMENIAY DGSDAPWDLY TFCQLHCST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-16 | 35 | 94 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-16 | 35 | 96 | 6 | 68 | ATERF1 |
3gcc_A | 6e-16 | 35 | 96 | 6 | 68 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015878794.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015878794.1 | 0.0 | ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | A0A2N9FV31 | 1e-91 | A0A2N9FV31_FAGSY; Uncharacterized protein | ||||
STRING | XP_008351488.1 | 2e-82 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3341 | 30 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-31 | related to AP2 11 |