PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878539.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 383aa    MW: 42646.6 Da    PI: 7.0849
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd ++++G g+W++ ++  g++R++k+c++rw +yl
   XP_015878539.1 17 KGAWTPEEDKKLVDHIQKHGHGSWRALPKLAGLKRCGKSCRLRWTNYL 64
                     79********************************************97 PP
2Myb_DNA-binding55.31.5e-1770115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+  +++++++lG++ W+tIa +++ gRt++++k++w+++l
   XP_015878539.1  70 RGKFSQEEEHSIINLHALLGNK-WSTIAGHLP-GRTDNEIKNFWNTHL 115
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.181264IPR017930Myb domain
SuperFamilySSF466893.18E-3015111IPR009057Homeodomain-like
SMARTSM007171.1E-141666IPR001005SANT/Myb domain
PfamPF002496.6E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-231871IPR009057Homeodomain-like
CDDcd001676.73E-121964No hitNo description
PROSITE profilePS5129425.94565119IPR017930Myb domain
SMARTSM007172.8E-1469117IPR001005SANT/Myb domain
PfamPF002491.0E-1570115IPR001005SANT/Myb domain
CDDcd001673.21E-1072115No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2772120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MMGRAADDEK GTLMIKKGAW TPEEDKKLVD HIQKHGHGSW RALPKLAGLK RCGKSCRLRW  60
TNYLRPDVKR GKFSQEEEHS IINLHALLGN KWSTIAGHLP GRTDNEIKNF WNTHLKKKLV  120
KMGIDPVTHR PLTTHHQYDH NNILSNLLLQ PQSTLINADA AAANVANLLN PIWEFNNALR  180
LSYCPSSDAS VQQIANNIQA LHDLVQVLFG STASPIPSPP TTSSSSTPNM ANISVGTNIS  240
THQLYFHTNI NPNAEASQPT PTSYDYNHHP PISGYKFSTN TSIGTASTSN GAIPNFNDLD  300
QLPHLVPASY TKEINASTCT DIGDDDDHHH HHHHEKEISK KINISPNIHI SNPSSTSTTF  360
EVLGWRDLID DEATDSYWKD IME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261511925128MYB TRANSFORMING PROTEIN
1mse_C2e-26141191105C-Myb DNA-Binding Domain
1msf_C2e-26141191105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878539.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878538.10.0transcription factor MYB41-like
RefseqXP_015878539.10.0transcription factor MYB41-like
SwissprotQ9S9Z25e-70MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A061EYD85e-97A0A061EYD8_THECC; Myb domain protein 107
STRINGEOY101108e-98(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-75myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]