PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878369.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRF
Protein Properties Length: 323aa    MW: 35731.4 Da    PI: 8.0316
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.66.2e-2578122145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  XP_015878369.1  78 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 122
                     79****************************************986 PP
2QLQ63.65e-221652137
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  XP_015878369.1 16 SPFTVSQWQELEHQYLIFKYMMAGLPVPPDLVLPIQK 52
                    89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-111652IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.6E-161751IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.4851752IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76278122IPR014977WRC domain
PfamPF088793.7E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNTGSGGGGG ETGMRSPFTV SQWQELEHQY LIFKYMMAGL PVPPDLVLPI QKSFESISHR  60
FFHHPSMGYC SFYGKKVDPE PGRCRRTDGK KWRCSKDAYP DSKYCERHMH RGRNRSRKPV  120
ESQTMTQSSS TVTSLTVTGS SGGTGSFQSL PLSALGNTQG TGAGVATQSH YHMDSIPYGI  180
PNKDYRYIQG PKPGVGEHSF FSDASGSNRS LHMDSSLDNT WPLMSSRVAT FPASKSGENS  240
ILQNEYPQHS FFSGEFSSGD TVKQEGQSLR PFFDEWPKSR ESWSGLEDER SNQTSFSTTQ  300
LSISIPMNSS DFSSTSSRSV HDS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4825102e-78AM482510.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X084524.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878369.10.0growth-regulating factor 4-like
SwissprotQ6AWY65e-92GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A2P6SQ100.0A0A2P6SQ10_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGEMJ206880.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-45growth-regulating factor 5