PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878083.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 225aa    MW: 24237 Da    PI: 4.9869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878083.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.1e-1657106155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+G+r+++  g+Wv+eIr+p++   ++r++lg++  +++Aa+a++ a+++l+g
  XP_015878083.1  57 PVYRGIRFRS--GKWVSEIREPRK---STRIWLGTYPIPDMAAAAYDVAALALKG 106
                     68*****976..*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-1057106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-2458115IPR001471AP2/ERF domain
PROSITE profilePS5103219.16458114IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1658115IPR016177DNA-binding domain
SMARTSM003807.8E-2458120IPR001471AP2/ERF domain
CDDcd000181.43E-1459115No hitNo description
PRINTSPR003673.3E-55970IPR001471AP2/ERF domain
PRINTSPR003673.3E-596116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MADPPPPPPR KLPESDQSFD VPNTSDDVAP HENQPSPRPR IHSPRAGSSS GSVRRHPVYR  60
GIRFRSGKWV SEIREPRKST RIWLGTYPIP DMAAAAYDVA ALALKGPDTA LNFPNCILSY  120
PIPASTSAGD IRAAAARAAE SKLPTKPQEA GGESSKPPSE KEESSGGSSM VKSGEEFIDE  180
EELLNMPNLL VDMAEGMLVS PPRIKSQSSD ESPTNSDGES LWSYT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878083.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867543.11e-162ethylene-responsive transcription factor ERF027-like
RefseqXP_015867544.11e-162ethylene-responsive transcription factor ERF027-like
RefseqXP_015878083.11e-162ethylene-responsive transcription factor ERF027
RefseqXP_015878084.11e-162ethylene-responsive transcription factor ERF027
SwissprotQ9FJ903e-57ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLF6HP685e-72F6HP68_VITVI; Uncharacterized protein
STRINGVIT_16s0100g00400.t019e-73(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-47ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]