PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878070.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 433aa    MW: 46850.3 Da    PI: 8.131
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878070.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.4e-09110130526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+++++ G C++G++CkF H+
  XP_015878070.1 110 VCSYWLQ-GNCSRGETCKFLHS 130
                     6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.9912147IPR000571Zinc finger, CCCH-type
SMARTSM003560.122346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7106130IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-6107131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-6109129IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6110130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.7E-16130241IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003208.7E-5136175IPR001680WD40 repeat
SuperFamilySSF509784.12E-45137425IPR017986WD40-repeat-containing domain
PfamPF004000.0017139175IPR001680WD40 repeat
PROSITE profilePS5008213.717143184IPR001680WD40 repeat
PROSITE profilePS5029420.856143392IPR017986WD40-repeat-containing domain
PRINTSPR003201.0E-5162176IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780162176IPR019775WD40 repeat, conserved site
SMARTSM0032014215252IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.104.2E-30242424IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0012259296IPR001680WD40 repeat
PfamPF004000.0062263296IPR001680WD40 repeat
PROSITE profilePS5008212.48266305IPR001680WD40 repeat
PROSITE patternPS006780283297IPR019775WD40 repeat, conserved site
PRINTSPR003201.0E-5283297IPR020472G-protein beta WD-40 repeat
SMARTSM003207.9E-4299336IPR001680WD40 repeat
PfamPF004000.14301335IPR001680WD40 repeat
PRINTSPR003201.0E-5323337IPR020472G-protein beta WD-40 repeat
SMARTSM0032098342383IPR001680WD40 repeat
SMARTSM003207.8386423IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDVDGGGNKR VFQRLGGSST DPKNKVCYHW RAGKCNRYPC PFLHRELPSP PIQPPNGTAS  60
SKRHHVFNAA AADDPTVPRR APNNTWGRPH AGRGGGGGAN NRVVRKMDKV CSYWLQGNCS  120
RGETCKFLHS WSLGDGFSLL SQLDGHQKVV SAIAMPAGSD KLYTGSKDET LRVWDCQSGQ  180
CIGVLNLGGE VGCMISEGPW IFVGLPSIVK AWNTQTNMDL SLSGPVGQVY ALIVGNDLLF  240
AGTQDGSILA WKFNAAVNCF EPAASLKGHT LAVVSLVVGA NRLYSGSMDH SIRVWNLETL  300
QCIQTLTEHT NVVMSVLIWD HYLLSCSLDK TIKAWVTGQS GNLEVAYTHT EEHGLLTLGG  360
MYDSESKPLL LCSTNDNSVR IYDLPSFAER GKIFSKMEIR AIQIGPGGIF FTGDGTGQVK  420
VWKLAAVEAA NPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-201314248323Tako8
6g6n_A1e-201314248323Tako8
6g6n_B1e-201314248323Tako8
6g6n_C1e-201314248323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878070.10.0zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLM5X1760.0M5X176_PRUPE; Uncharacterized protein
STRINGEMJ192310.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1