PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878031.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28707.6 Da    PI: 9.3926
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878031.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF922.9e-29958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +rienk+nrqvtfskRrng+lKKA ELSvLCdaev +iifss+gkl+e+ 
  XP_015878031.1  9 ERIENKINRQVTFSKRRNGLLKKACELSVLCDAEVGLIIFSSRGKLFEFG 58
                    69**********************************************95 PP
2K-box82.59.4e-28811738100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +  e+++++l+qe+++L+ + ++Lq + Rhl Ge+Le+L +keLq+Le+qL++ + + R++K++++l+ +e+l++ke++l+e+nk+L++klee
  XP_015878031.1  81 NIVENETQNLYQEVSRLRVRHQSLQLSERHLHGENLEELGIKELQNLEKQLDRTIVQTRQRKTQMMLKRLEDLREKERNLEEINKQLKSKLEE 173
                     467899*******************999**************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.048161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.18E-40278No hitNo description
SuperFamilySSF554554.84E-32280IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-2284171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.33287177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVVLER IENKINRQVT FSKRRNGLLK KACELSVLCD AEVGLIIFSS RGKLFEFGST  60
DLKKILERYR HFCYTSEDYH NIVENETQNL YQEVSRLRVR HQSLQLSERH LHGENLEELG  120
IKELQNLEKQ LDRTIVQTRQ RKTQMMLKRL EDLREKERNL EEINKQLKSK LEEGRHASPI  180
QGGGDPNAVD VNNRFMSYPT QNHCFQSQPF LQMGYHSSIH QEKAINEART MAGGNRWNQD  240
NWLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-22187187MEF2 CHIMERA
6bz1_B1e-22187187MEF2 CHIMERA
6bz1_C1e-22187187MEF2 CHIMERA
6bz1_D1e-22187187MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157LREKER
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878031.10.0truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ8LLR18e-88MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A0B4U5D51e-89A0A0B4U5D5_FICCA; MADS-box protein
STRINGVIT_15s0048g01270.t014e-86(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.18e-75AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]