PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015877981.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 191aa MW: 21285 Da PI: 6.5241 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.6 | 8e-07 | 16 | 67 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++++ +Er+RR+++ + Lr+ lP + ++K s a+ +Av++I+++ XP_015877981.1 16 KKMMRRDNERQRRQQMALLNASLRSQLPLeS---IKGKRSVADHINEAVNHINNM 67 57778899*********************66...******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-9 | 12 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.547 | 15 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.22E-5 | 15 | 72 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-7 | 18 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MSTSDNRTNS SDNDEKKMMR RDNERQRRQQ MALLNASLRS QLPLESIKGK RSVADHINEA 60 VNHINNMKNK IEQLTVEKDK IESSLNISTN SPKSETSSDN KQSNSVVIRP CWGGMEIVIS 120 GGLSGEDLPL SSVLEVLVLE EGLNVVRCAS TKANGRLIHT IQAEVDDINR VDLSELQQKL 180 KVSIYDSLMG H |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015877981.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015877981.1 | 1e-136 | transcription factor bHLH36-like | ||||
TrEMBL | W9S1D9 | 8e-55 | W9S1D9_9ROSA; Uncharacterized protein | ||||
STRING | XP_010109064.1 | 1e-55 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 2e-33 | bHLH family protein |