PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877609.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 879aa    MW: 97575.5 Da    PI: 6.4463
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877609.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++
  XP_015877609.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEK 218
                     99*****************************9777666.49************************************************..8899 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_015877609.1 219 NQLLLGIRRA 228
                     999****997 PP
2Auxin_resp120.81.1e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_015877609.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-41120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-21126227No hitNo description
PROSITE profilePS5086312.492127229IPR003340B3 DNA binding domain
PfamPF023624.6E-22127228IPR003340B3 DNA binding domain
SMARTSM010192.8E-24127229IPR003340B3 DNA binding domain
PfamPF065071.1E-34253336IPR010525Auxin response factor
PfamPF023091.2E-7739835IPR033389AUX/IAA domain
SuperFamilySSF542775.36E-7742821No hitNo description
PROSITE profilePS5174524.101746830IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MRLSSAGFSP QPPEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLNPQEQKDA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSL QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT  360
TFPMYSSPFP LRLKRPWPPG LPAFHGIKED DLGMNSPLMW LRGDNGDRGI QSLNFQGIGV  420
TPWMQPRLDA TMLGLQTDMY QAMAAAALQD MRPPMLQQSQ PQQPFLQGLQ ENQHQSHSQP  480
QTQPHLLQQQ LQHQHSFGNQ QQQQQQQHQQ QQPQPQSQPQ QQADHQQIPS AVSAISQFTT  540
TSQPQSPSLQ AISSLCHQQS FSDSNGNAVT STIVSPLHSI LGSFPQDESS HLLNLPRNNA  600
LSSVWPSKRA AVEPLYSSGA PQCVLPQVEQ LGPPQTNLSQ NSVSLPPFPG RECPIDQEGN  660
SDPQSHLLFG VNIEASSLIM QNGMSNLRGV GSDSDTTTIP FPSSNYMSST GSDFSLNPVM  720
TPSSCVDDSG FLQSPENVGQ GNTPTRTFVK VYKSGSFGRS LDITKFSSYH ELRSELARMF  780
GLEGELEDPL RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE  840
LLNSVPIQRL SNNSCDDYGS RQDSRNLNSG ITSVGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641635747388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877609.10.0auxin response factor 6 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2C9UGD00.0A0A2C9UGD0_MANES; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]