PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015877571.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bZIP

Protein Properties

Length: 386aa MW: 42154.4 Da PI: 6.1953

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015877571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.2e-10	185	233	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + XP_015877571.1 185 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ 233 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-15	181	245	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.668	183	246	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	185	236	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.7E-8	185	239	No hit	No description
Pfam	PF00170	9.4E-9	185	233	IPR004827	Basic-leucine zipper domain
CDD	cd14703	6.00E-23	186	235	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MEIQDPLNPD PDPNPSSDNN NKASSSSSQS QNRPNITSFP NPTLPFRGSG HRRSQSEVHF 60 RISDDIDLLS DPFDAPSASF EELASEDDLF CTYMDIEKFG SKLDDGSSSA PKPDNAGGLG 120 GGSVYTESGG GGSGDVRGGG GGEKSSRPRH RHSNSVDGSS IMDTIDAKKA MAPDKLAELW 180 AIDPKRAKRI LANRQSAARS KERKARYISE LERKVQTLQT EATTLSAQLT LFQRDTTGLS 240 TENTELKLRL QAMEQQAQLR DALNEALKKE VERLKVATGE MLTHTDTYNL GMHQMPYAQS 300 SFFSNQPQPG PGEPQNIQMP QFRSFQSNTS TSQHPLLAAS RSHAFSEMLQ QDPIGRLQGL 360 DISSRSSHIV KHEVTSISAS ESGSRF

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MEIQDPLNPD PDPNPSSDNN NKASSSSSQS QNRPNITSFP NPTLPFRGSG HRRSQSEVHF  60
RISDDIDLLS DPFDAPSASF EELASEDDLF CTYMDIEKFG SKLDDGSSSA PKPDNAGGLG  120
GGSVYTESGG GGSGDVRGGG GGEKSSRPRH RHSNSVDGSS IMDTIDAKKA MAPDKLAELW  180
AIDPKRAKRI LANRQSAARS KERKARYISE LERKVQTLQT EATTLSAQLT LFQRDTTGLS  240
TENTELKLRL QAMEQQAQLR DALNEALKKE VERLKVATGE MLTHTDTYNL GMHQMPYAQS  300
SFFSNQPQPG PGEPQNIQMP QFRSFQSNTS TSQHPLLAAS RSHAFSEMLQ QDPIGRLQGL  360
DISSRSSHIV KHEVTSISAS ESGSRF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015877571.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015877571.1	0.0	bZIP transcription factor 18
Swissprot	O22873	1e-115	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2P6SLS0	1e-180	A0A2P6SLS0_ROSCH; Putative transcription factor bZIP family
STRING	XP_008233880.1	1e-179	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-111	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]