PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015877183.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 477aa MW: 55085 Da PI: 9.0122

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015877183.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.9	2.8e-07	55	97	1	43
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43 +fY +YAk++ Fsvr ++sk+ k+++e+++++fv +keg ++ XP_015877183.1 55 EFYIKYAKKANFSVRSNSSKRCKDTNEVVRKEFVYYKEGVSSI 97 6**************************************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.7E-5	55	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MNVEQLAANS DPIRVEEISL LSCSKSVDDV YIPQVFENYK PKVGQELGSV DEAYEFYIKY 60 AKKANFSVRS NSSKRCKDTN EVVRKEFVYY KEGVSSIKEI GGIENIGCTK KDIYNYEAKL 120 PNEMRGQDAE LLKEYLLTEQ EKDPSLIFEI DVDDDCQLKL CFCADLVSRR AYGCFGDVII 180 FYTTYNTNQY EIFIRNSDNV FGNQNAERKW TTIIKKVSLY DNDWLSSIFE IRNRWVPAYV 240 NHIFSAGMSS SQRTESSHAF FKKYVSKKNL LMDFKLRCNR VVAHQRHEEL AADHIDINEK 300 PVLKLPLEME NCKKFESQGI PCSYILAFLR LFDNILLPNK YIMKRWTRVA KSQMISDKQG 360 VDISGKGGSM KSGGMFIKGS NVHDITLKDP FQVSAKGCGR RLKREKEIAT KTAKYRGQRC 420 NGYGKIGESH DKRKCPILNN QPSQNWGTFL NKNWNFHHNV TVLLLQVNIR KLKDDFI

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MNVEQLAANS DPIRVEEISL LSCSKSVDDV YIPQVFENYK PKVGQELGSV DEAYEFYIKY  60
AKKANFSVRS NSSKRCKDTN EVVRKEFVYY KEGVSSIKEI GGIENIGCTK KDIYNYEAKL  120
PNEMRGQDAE LLKEYLLTEQ EKDPSLIFEI DVDDDCQLKL CFCADLVSRR AYGCFGDVII  180
FYTTYNTNQY EIFIRNSDNV FGNQNAERKW TTIIKKVSLY DNDWLSSIFE IRNRWVPAYV  240
NHIFSAGMSS SQRTESSHAF FKKYVSKKNL LMDFKLRCNR VVAHQRHEEL AADHIDINEK  300
PVLKLPLEME NCKKFESQGI PCSYILAFLR LFDNILLPNK YIMKRWTRVA KSQMISDKQG  360
VDISGKGGSM KSGGMFIKGS NVHDITLKDP FQVSAKGCGR RLKREKEIAT KTAKYRGQRC  420
NGYGKIGESH DKRKCPILNN QPSQNWGTFL NKNWNFHHNV TVLLLQVNIR KLKDDFI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015877183.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024927434.1	1e-127	protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13280	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-17	far-red elongated hypocotyls 3