PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877173.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 167aa    MW: 18434.1 Da    PI: 10.3199
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877173.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.91.1e-221053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     ++++s rqvtfskRr+g++KKA+EL +LC+aevav++fs+ gk
  XP_015877173.1 10 MVKDSSSRQVTFSKRRTGLFKKANELATLCGAEVAVVVFSPGGK 53
                    6799*************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-29174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.179161IPR002100Transcription factor, MADS-box
CDDcd002659.86E-34271No hitNo description
PRINTSPR004045.2E-21323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-261157IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGRRKIEIKM VKDSSSRQVT FSKRRTGLFK KANELATLCG AEVAVVVFSP GGKPFSFGHP  60
NVDSVADRFL NQDPEPKDGN VIGTSSAEKL NQQLTDLLKQ SQAEKKRGEI LDKAIKASHK  120
TSIDDLSLNE LEKLKRSLEN LRENLKVQAN EMEASSSLLL LANKPAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A9e-17179178MEF2 CHIMERA
6bz1_B9e-17179178MEF2 CHIMERA
6bz1_C9e-17179178MEF2 CHIMERA
6bz1_D9e-17179178MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877173.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877173.11e-118agamous-like MADS-box protein AGL29
SwissprotO647035e-48AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLA0A2N9GSZ93e-75A0A2N9GSZ9_FAGSY; Uncharacterized protein
STRINGEMJ143472e-70(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-46AGAMOUS-like 29
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]