PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877122.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 364aa    MW: 41394.6 Da    PI: 5.0713
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.5e-0690113226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C  G +CkF+H+
  XP_015877122.1  90 KSILCEFFKA-GQCTKGFKCKFSHD 113
                     6679**7777.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.39488115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-688113IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-588114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-490114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.216159197IPR000571Zinc finger, CCCH-type
SMARTSM003562.6159196IPR000571Zinc finger, CCCH-type
PfamPF165436.3E-18216296IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MPPKQQSKAD MAKKQKVVED KTFGLKNKNK SKNVQKYVQN LKQAVQPKPD ATKVAAKKKK  60
EEEKAKEKEL NDLFKVAVSQ PKVPVGVDPK SILCEFFKAG QCTKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DGEDTMEDWD QEKLEKVVES KTKEYNQNKP TEIVCKYFLD AVEKKQYGWF  180
WVCPNGGKDC HYRHALPPGY VLKSQMKALL EEEAEKIPVE EEIENQRAKV TTTTPMTPEL  240
FLQWKKKKME ERDAGLAAQR AERAKNDRMS GRELFLSDAS LFVDDAEAYE KYLREEPEVA  300
ERKAQDNTAV EGPSASSSAV AGSEEAPPDD DDDDDELDMD ELNELEASLS RTSIQIREPG  360
IEAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877122.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877122.10.0zinc finger CCCH domain-containing protein 11 isoform X1
RefseqXP_015877123.10.0zinc finger CCCH domain-containing protein 11 isoform X1
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A2R6R7Z00.0A0A2R6R7Z0_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_009357606.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44191113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-163C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]