PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877111.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 315aa    MW: 35395 Da    PI: 4.0715
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37.3e-175441150
                    HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    ++  +R+++++KKA+ELSvLC+++v+++i +s+g +  ++
  XP_015877111.1  5 TSEKNRKATLMKKASELSVLCGVDVLMVICGSDGSMEVWP 44
                    66679********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0024145IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.722147IPR002100Transcription factor, MADS-box
PfamPF003191.1E-11843IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-15876IPR002100Transcription factor, MADS-box
CDDcd001203.93E-101044No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MASSTSEKNR KATLMKKASE LSVLCGVDVL MVICGSDGSM EVWPNDSAKA NSTLSKYYQA  60
IHKPKPINQI NNLNISNSDL LQFPSEQKVE EIQTDDFAKL ENSDLVGLSD YLETKIRFLD  120
QKIDESLMMN KGKEIIVYNE ENHEEEEEER LDGFWSDVLN KLDQESSSEK PNFPFDYGVG  180
NTSSSSSSSS SVDSVNAGDY QMGFGSESLM MKGKEIQHCS GDHEEERLDG IWSDILLELD  240
QECELPSLPF EYGSTSINGS DYRLGAVEAD FGYGVESGWY EEQSRLCDPY FGYSTDELGL  300
ECMMEPNPKR QKLEH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877111.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877111.10.0agamous-like MADS-box protein AGL75
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1547579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02235.13e-09AGAMOUS-like 51