PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015876980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 294aa MW: 33845.6 Da PI: 9.3156 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.3 | 4.2e-06 | 177 | 216 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L++A YIk Lq XP_015876980.1 177 RRTQKLSDKITALQKLVSPY-----GKTDTASVLQEASGYIKLLQ 216 8*****************99.....9****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.423 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-7 | 177 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-9 | 177 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.35E-5 | 177 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030042 | Biological Process | actin filament depolymerization | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0003779 | Molecular Function | actin binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MKNAILPPVS SHIYDFGNNE IQILPNWDIP MQFNSKISAF CMDSEVLDND NQIRAEAYSF 60 PIQSSYTVTH QPAGFPTTLH HDENISHQSM RLGKKILAPQ FDTLEFFMQA IQNARKRPIE 120 VDELLPKNDI GELIGNQSTD MSEWRKIKRN KTTNFEHQWQ EGSTRIQQQR LLVPTVRRTQ 180 KLSDKITALQ KLVSPYGKTD TASVLQEASG YIKLLQDQIR QNLFRMLSSS YDSVRGLQPV 240 QEKGKGRLDL RSRGLCLVPI SFTQKVTMEE RVDHNHALSL SRKPVLDRNF YCLN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015876980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT381859 | 0.0 | KT381859.1 Ziziphus jujuba actin-depolymerizing factor 1 (ACT1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876980.1 | 0.0 | actin-depolymerizing factor 1-like isoform X1 | ||||
TrEMBL | A0A0U4JRK1 | 1e-134 | A0A0U4JRK1_ZIZJJ; Actin-depolymerizing factor 1 | ||||
STRING | XP_008371277.1 | 4e-87 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 1e-20 | bHLH family protein |