PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015876955.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 189aa MW: 20635.3 Da PI: 9.8236 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00059 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H XP_015876955.1 40 FECKTCNRTFPSFQALGGHRASH 62 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.49E-9 | 38 | 111 | No hit | No description |
Pfam | PF13912 | 1.7E-13 | 39 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.092 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.034 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.9E-10 | 88 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.224 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.58 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MKRSITEREV ENITMANYLM FLSQGGEIDS SSNSSPARVF ECKTCNRTFP SFQALGGHRA 60 SHKKPRLTGD GSSDNSQSQG SSPMKPKTHE CSVCGLEFAI GQALGGHMRR HRASMNETQG 120 SSPRLPLQDR FSSSSSSSSS PTRVVPVVKK TDNNSRRVLC LDLNLTPLEN DIKILQLGKS 180 TVSLVNCFL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015876955.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876954.1 | 1e-137 | zinc finger protein ZAT11-like isoform X1 | ||||
Refseq | XP_015876955.1 | 1e-137 | zinc finger protein ZAT11-like isoform X2 | ||||
TrEMBL | A0A2P5CMQ1 | 5e-74 | A0A2P5CMQ1_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | XP_009357691.1 | 2e-70 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 7e-39 | C2H2 family protein |