PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876954.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 189aa    MW: 20635.3 Da    PI: 9.8236
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000594062123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+++F++   L  H  +H
  XP_015876954.1 40 FECKTCNRTFPSFQALGGHRASH 62
                    89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.49E-938111No hitNo description
PfamPF139121.7E-133964IPR007087Zinc finger, C2H2
SMARTSM003550.0924062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0344067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139124.9E-1088113IPR007087Zinc finger, C2H2
PROSITE profilePS501579.22489116IPR007087Zinc finger, C2H2
SMARTSM003550.5889111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MKRSITEREV ENITMANYLM FLSQGGEIDS SSNSSPARVF ECKTCNRTFP SFQALGGHRA  60
SHKKPRLTGD GSSDNSQSQG SSPMKPKTHE CSVCGLEFAI GQALGGHMRR HRASMNETQG  120
SSPRLPLQDR FSSSSSSSSS PTRVVPVVKK TDNNSRRVLC LDLNLTPLEN DIKILQLGKS  180
TVSLVNCFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876954.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876954.11e-137zinc finger protein ZAT11-like isoform X1
RefseqXP_015876955.11e-137zinc finger protein ZAT11-like isoform X2
TrEMBLA0A2P5CMQ15e-74A0A2P5CMQ1_TREOI; TFIIH C1-like domain containing protein
STRINGXP_009357691.12e-70(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.17e-39C2H2 family protein