PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015876904.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 743aa MW: 83759.3 Da PI: 5.7633

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015876904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	393.6	2.2e-120	369	740	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+av+++dl+ a+++L+++++++sp+gd mqR+a+yf+ +L+ar+a+s++++ k+l +++ts ++ l+a++lf ++P+ k+s+ XP_015876904.1 369 LRTLLTLCAQAVAADDLRTANEFLKQIRQHSSPTGDGMQRIAHYFADGLEARIAGSGTQIHKTLITWPTS---AADILKAYHLFLAACPFKKLSN 460 5789***************************************************************9...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + N++I++ +e+++r+HiiDf+i +G+QWp+L++ L+sRpeg+p+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfef++ +a+++++ XP_015876904.1 461 FFSNKTIMNIAEKATRLHIIDFGILYGFQWPCLIERLSSRPEGAPMLRITGIDLPQPGfrPAERVEETGRRLANYAETFKVPFEFKA-IAQKWDT 554 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L+++ +E+l+Vn++++ +llde+v ++s+rd vL+l+++++P+v+++ + h+++ F +rf eal ++s+lfd+le+++pre er+ XP_015876904.1 555 IQVEDLKLRDDEVLVVNVMYRFRNLLDETVVVDSPRDIVLNLIRKINPNVFIHGIVNGAHSAPFFITRFREALFHFSTLFDMLEVNVPREIPERM 649 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E++++gre+ nv+aceg+er+er et+++W+ r ++aGF+++pl++++ ak ++ ++ + + ++e+ ++l++gWk+r ++++S W+ XP_015876904.1 650 LIEKVIFGREAINVIACEGSERTERPETYKQWQVRNQRAGFRQLPLNQEIWRMAKDRMKSFYHKDFVIDEDGEWLLQGWKGRIVYALSTWK 740 **********************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.515	343	720	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.5E-118	369	740	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MVMDQHLTGL SINGLEYMRD DSLLGLSNQN KGDNESGTRD QFVDQNYANM LLFPPNSIPS 60 DSSPSFSVNQ EGDTHEDYDF SDLVLKYISQ MLMEEDIEEK TSMFHESSAL QAAEKSLYEL 120 LGEKYPSSPH NSPSPSHDQK HERPDESPGL QYGNCSSNTN GTSSVSLVDP GWIYDLGEYK 180 SPQVAAQSTS HSSHGSPNGT GNLMDGSMDS PVSILKVPDM FNENESVMQF KRGFEEASKF 240 IPNGNSPFFD LESNRLLPKE VKIETRDVVV KFENENLMDG SRRKKNPHSE DASSEGGRNN 300 KQSAVCSEST VSSEMFDMIL LNCGQGESAL REALQNGTSK NVQQNGQSKG SSGKTRGKKQ 360 GGKRDVVDLR TLLTLCAQAV AADDLRTANE FLKQIRQHSS PTGDGMQRIA HYFADGLEAR 420 IAGSGTQIHK TLITWPTSAA DILKAYHLFL AACPFKKLSN FFSNKTIMNI AEKATRLHII 480 DFGILYGFQW PCLIERLSSR PEGAPMLRIT GIDLPQPGFR PAERVEETGR RLANYAETFK 540 VPFEFKAIAQ KWDTIQVEDL KLRDDEVLVV NVMYRFRNLL DETVVVDSPR DIVLNLIRKI 600 NPNVFIHGIV NGAHSAPFFI TRFREALFHF STLFDMLEVN VPREIPERML IEKVIFGREA 660 INVIACEGSE RTERPETYKQ WQVRNQRAGF RQLPLNQEIW RMAKDRMKSF YHKDFVIDED 720 GEWLLQGWKG RIVYALSTWK PAS

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MVMDQHLTGL SINGLEYMRD DSLLGLSNQN KGDNESGTRD QFVDQNYANM LLFPPNSIPS  60
DSSPSFSVNQ EGDTHEDYDF SDLVLKYISQ MLMEEDIEEK TSMFHESSAL QAAEKSLYEL  120
LGEKYPSSPH NSPSPSHDQK HERPDESPGL QYGNCSSNTN GTSSVSLVDP GWIYDLGEYK  180
SPQVAAQSTS HSSHGSPNGT GNLMDGSMDS PVSILKVPDM FNENESVMQF KRGFEEASKF  240
IPNGNSPFFD LESNRLLPKE VKIETRDVVV KFENENLMDG SRRKKNPHSE DASSEGGRNN  300
KQSAVCSEST VSSEMFDMIL LNCGQGESAL REALQNGTSK NVQQNGQSKG SSGKTRGKKQ  360
GGKRDVVDLR TLLTLCAQAV AADDLRTANE FLKQIRQHSS PTGDGMQRIA HYFADGLEAR  420
IAGSGTQIHK TLITWPTSAA DILKAYHLFL AACPFKKLSN FFSNKTIMNI AEKATRLHII  480
DFGILYGFQW PCLIERLSSR PEGAPMLRIT GIDLPQPGFR PAERVEETGR RLANYAETFK  540
VPFEFKAIAQ KWDTIQVEDL KLRDDEVLVV NVMYRFRNLL DETVVVDSPR DIVLNLIRKI  600
NPNVFIHGIV NGAHSAPFFI TRFREALFHF STLFDMLEVN VPREIPERML IEKVIFGREA  660
INVIACEGSE RTERPETYKQ WQVRNQRAGF RQLPLNQEIW RMAKDRMKSF YHKDFVIDED  720
GEWLLQGWKG RIVYALSTWK PAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-52	376	743	26	382	Protein SCARECROW
5b3h_A	8e-52	376	743	25	381	Protein SCARECROW
5b3h_D	8e-52	376	743	25	381	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015876904.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024927511.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P5B7K4	0.0	A0A2P5B7K4_PARAD; GRAS transcription factor
TrEMBL	A0A2P5CIW2	0.0	A0A2P5CIW2_TREOI; GRAS transcription factor
STRING	XP_010096585.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]