PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876893.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 231aa    MW: 26631.7 Da    PI: 10.1949
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876893.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.12.3e-181151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i+n+s r+ tf kR++g++KK +ELS+LCd++++ i++s+ 
  XP_015876893.1 11 INNDSARKATFNKRKKGLMKKVSELSTLCDVDACAIVYSPY 51
                    99*************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.026149IPR002100Transcription factor, MADS-box
CDDcd002662.82E-31285No hitNo description
SuperFamilySSF554558.11E-26295IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-11323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MTRKKVKLAY INNDSARKAT FNKRKKGLMK KVSELSTLCD VDACAIVYSP YDTQPEIFPS  60
PSGAQRVLAK FKKMPAMEQN KKMVNQDSFL RQRIAKADEQ LRKQRKENRE KEMTRVMFQG  120
LTGQGGGLQG LSLVDLKDVG WLIDRNLREI DRRIEILKRE TQKQVKVESK ANNNNSIEAD  180
EHIMHKQPWF MDLMNPVQDQ QIGFGGDEIM MNILPFGDHN HNSLGSYPFF P
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876893.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024927105.11e-145agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-61AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0R7B3579e-97A0A0R7B357_9ROSA; Agamous-like protein
TrEMBLA0A314UMV21e-96A0A314UMV2_PRUYE; Agamous-like MADS-box protein AGL80
TrEMBLM5XR969e-97M5XR96_PRUPE; Uncharacterized protein
STRINGEMJ284392e-97(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-60AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]