PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015876811.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 261aa MW: 30709.2 Da PI: 9.2431 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.6 | 1e-08 | 125 | 152 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ XP_015876811.1 125 WKVAICGEYMKSRfkTCSHGTACNFIHC 152 899************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.70.330 | 8.4E-20 | 42 | 120 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SMART | SM00361 | 4.3E-5 | 44 | 118 | IPR003954 | RNA recognition motif domain, eukaryote |
PRINTS | PR01848 | 3.1E-20 | 51 | 66 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF54928 | 1.28E-16 | 53 | 122 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 8.552 | 59 | 122 | IPR000504 | RNA recognition motif domain |
PRINTS | PR01848 | 3.1E-20 | 79 | 101 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 3.1E-20 | 106 | 130 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 10.465 | 124 | 154 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-6 | 125 | 152 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 3.1E-20 | 144 | 156 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MRVVVHLIIL IKLFVILVLV KFVAKFTFPG VFGAVWMMMV MTSKYTDEEI ECSYEEFYED 60 VHTEFLKFGE IVNFKVCRNG PFHLRGNVYI QYKCLDSAVL AYHSINGRYF AGKQVICEFV 120 NLTRWKVAIC GEYMKSRFKT CSHGTACNFI HCFRNPGGDY EWADGDKPPP KYWVQRMVAL 180 FGYSEDSVYD REKSQENFGK MLAAESGRYR SRRSRSREMD STNYGTSRRR NDNENYVRSN 240 RQRCKSDYKE QNKMTAYANR V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 4e-15 | 44 | 151 | 63 | 167 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015876811.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876778.1 | 1e-108 | zinc finger CCCH domain-containing protein 5-like | ||||
Swissprot | Q6YVX9 | 6e-86 | C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | A0A151T875 | 7e-97 | A0A151T875_CAJCA; Zinc finger CCCH domain-containing protein 5 | ||||
STRING | XP_007148590.1 | 4e-95 | (Phaseolus vulgaris) | ||||
STRING | cassava4.1_003837m | 6e-95 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4713 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 8e-78 | C3H family protein |
Publications ? help Back to Top | |||
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