PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876811.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 261aa    MW: 30709.2 Da    PI: 9.2431
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08125152126
                     --S---SGGGGTS..--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                     +k ++C  ++++   tC++G  C+F+H+
  XP_015876811.1 125 WKVAICGEYMKSRfkTCSHGTACNFIHC 152
                     899************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3308.4E-2042120IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003614.3E-544118IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018483.1E-205166IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549281.28E-1653122IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501028.55259122IPR000504RNA recognition motif domain
PRINTSPR018483.1E-2079101IPR009145U2 auxiliary factor small subunit
PRINTSPR018483.1E-20106130IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.465124154IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6125152IPR000571Zinc finger, CCCH-type
PRINTSPR018483.1E-20144156IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MRVVVHLIIL IKLFVILVLV KFVAKFTFPG VFGAVWMMMV MTSKYTDEEI ECSYEEFYED  60
VHTEFLKFGE IVNFKVCRNG PFHLRGNVYI QYKCLDSAVL AYHSINGRYF AGKQVICEFV  120
NLTRWKVAIC GEYMKSRFKT CSHGTACNFI HCFRNPGGDY EWADGDKPPP KYWVQRMVAL  180
FGYSEDSVYD REKSQENFGK MLAAESGRYR SRRSRSREMD STNYGTSRRR NDNENYVRSN  240
RQRCKSDYKE QNKMTAYANR V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A4e-154415163167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876811.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876778.11e-108zinc finger CCCH domain-containing protein 5-like
SwissprotQ6YVX96e-86C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A151T8757e-97A0A151T875_CAJCA; Zinc finger CCCH domain-containing protein 5
STRINGXP_007148590.14e-95(Phaseolus vulgaris)
STRINGcassava4.1_003837m6e-95(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.18e-78C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]