PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015876782.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24101.9 Da PI: 8.7359 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.8 | 3.4e-19 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien+ r +tfskRr gi KK +EL +LC+aev v+ifs++gk + + XP_015876782.1 15 KRIENEDDRLITFSKRRSGIYKKSSELVTLCGAEVGVVIFSPSGKPFSF 63 79******************************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-29 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.581 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-27 | 8 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.29E-34 | 8 | 79 | No hit | No description |
PRINTS | PR00404 | 7.8E-20 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-23 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-20 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-20 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MEGKQTKGRQ KIEMKRIENE DDRLITFSKR RSGIYKKSSE LVTLCGAEVG VVIFSPSGKP 60 FSFAHPSIES IANRFLNQNP PQTDNTHPLV EAHRRVRIDE LNQQHNDLHN QLEAEKERGK 120 ELQMLARARG NQQGWWETPL EELGFEELQN MHASLEELHR NICNHVKGRS RFPMSSSSFH 180 GGAGTSAQGS MNPFLANASA THPPGYGYGR QHF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 4e-15 | 8 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-15 | 8 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-15 | 8 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-15 | 8 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-15 | 8 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-15 | 8 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-15 | 8 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-15 | 8 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-15 | 8 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-15 | 8 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015876782.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876782.1 | 1e-159 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2N9J3R9 | 1e-103 | A0A2N9J3R9_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_025366m | 4e-84 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 1e-46 | AGAMOUS-like 57 |