PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015876778.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 480aa MW: 56208.5 Da PI: 8.8986 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.4 | 1e-07 | 123 | 150 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ XP_015876778.1 123 WKVAICGEHMKSRfkTCSHGTACNFIHC 150 899************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.70.330 | 1.2E-14 | 35 | 118 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 3.9E-19 | 41 | 56 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF54928 | 4.8E-12 | 43 | 120 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 3.9E-19 | 77 | 99 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 3.9E-19 | 104 | 128 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 9.648 | 122 | 152 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-5 | 123 | 150 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 3.9E-19 | 142 | 154 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MRKVIPNLET LISSNPSVVL SPAICLFDLI TNDFYTAEKI ERSYEEFYED VHTEFLKFGE 60 IVNFKGNESN LYQVCRNGSF HLGGNVFIQY KCLDSAVLAY HSINGRYFAG KQVICEFVNL 120 TRWKVAICGE HMKSRFKTCS HGTACNFIHC FRNPGEDYEW ADGDKPPPKE KSQENFGQSK 180 SFSKMSVAEA GRYRSRRSRS REMDSTNYGT SGRRSDNEKY VRSNRQRCKS DYKEQNKNDG 240 LCKQSMNSKD DHYRKRKNHD MDIEREMFDN VRDTDRDEYH DCSRNRSRWQ GRNSKNRSFE 300 TDSDGGKAQK IVGARYLDDY GERENKNDEV DSHSDKGRRE SHHDRTRKSS RSRGKVEYPA 360 SYRDKENRDH GAEGGWSHMD SDDDAHRRRS KRTRDDDADK HHGKRRKSSV QSSKVSKFSD 420 EHGDSKDRIR GSDFDDDWLD KSTERHHRHT RGFPNEGSDI SEDQVEPTRR IKAERRHIRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 6e-11 | 35 | 149 | 64 | 167 | Splicing factor U2AF 23 kDa subunit |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 386 | 406 | RRRSKRTRDDDADKHHGKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015876778.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876778.1 | 0.0 | zinc finger CCCH domain-containing protein 5-like | ||||
TrEMBL | A0A2N9HQF2 | 1e-102 | A0A2N9HQF2_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4713 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 6e-69 | C3H family protein |