PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876778.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 480aa    MW: 56208.5 Da    PI: 8.8986
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-07123150126
                     --S---SGGGGTS..--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                     +k ++C  ++++   tC++G  C+F+H+
  XP_015876778.1 123 WKVAICGEHMKSRfkTCSHGTACNFIHC 150
                     899************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3301.2E-1435118IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018483.9E-194156IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549284.8E-1243120IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018483.9E-197799IPR009145U2 auxiliary factor small subunit
PRINTSPR018483.9E-19104128IPR009145U2 auxiliary factor small subunit
PROSITE profilePS501039.648122152IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-5123150IPR000571Zinc finger, CCCH-type
PRINTSPR018483.9E-19142154IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MRKVIPNLET LISSNPSVVL SPAICLFDLI TNDFYTAEKI ERSYEEFYED VHTEFLKFGE  60
IVNFKGNESN LYQVCRNGSF HLGGNVFIQY KCLDSAVLAY HSINGRYFAG KQVICEFVNL  120
TRWKVAICGE HMKSRFKTCS HGTACNFIHC FRNPGEDYEW ADGDKPPPKE KSQENFGQSK  180
SFSKMSVAEA GRYRSRRSRS REMDSTNYGT SGRRSDNEKY VRSNRQRCKS DYKEQNKNDG  240
LCKQSMNSKD DHYRKRKNHD MDIEREMFDN VRDTDRDEYH DCSRNRSRWQ GRNSKNRSFE  300
TDSDGGKAQK IVGARYLDDY GERENKNDEV DSHSDKGRRE SHHDRTRKSS RSRGKVEYPA  360
SYRDKENRDH GAEGGWSHMD SDDDAHRRRS KRTRDDDADK HHGKRRKSSV QSSKVSKFSD  420
EHGDSKDRIR GSDFDDDWLD KSTERHHRHT RGFPNEGSDI SEDQVEPTRR IKAERRHIRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A6e-113514964167Splicing factor U2AF 23 kDa subunit
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386406RRRSKRTRDDDADKHHGKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876778.10.0zinc finger CCCH domain-containing protein 5-like
TrEMBLA0A2N9HQF21e-102A0A2N9HQF2_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.16e-69C3H family protein