PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015876715.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 294aa MW: 33088.5 Da PI: 9.2766 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 50 | 4.7e-16 | 210 | 235 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd+C+FaHg XP_015876715.1 210 FKTELCNKWQETGACPYGDQCQFAHG 235 79***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-19 | 205 | 242 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-11 | 206 | 241 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-9 | 209 | 236 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.539 | 209 | 237 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-13 | 210 | 235 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-7 | 243 | 277 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-10 | 243 | 274 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 247 | 274 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.333 | 247 | 275 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
SLPIAPYQVD SDSETSSSSA AAIQKLHLVH SLLTQDRQEM VNRHNLCLTR LREASEEADS 60 LRRENTHLRT VNRELNKHLN LLIQAAVQKQ LDASTSEYTG LIRTLNTFRN RARALDNEEV 120 SDESPTSVIE NGMVENVEGG RSSLPKSISV RSSGYLKMGT HAVASNGGRA RSSTRSRAAT 180 PQTVKQKVCV SGRKKEEVPL ELDVYKQGMF KTELCNKWQE TGACPYGDQC QFAHGIEELR 240 PVLRHPRYKT EVCRMVIAGV PCPYGHRCHF RHALTDQERF MIPLKRRPSA PLDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 2e-21 | 210 | 272 | 4 | 66 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015876715.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876715.1 | 0.0 | zinc finger CCCH domain-containing protein 15, partial | ||||
Swissprot | Q9C9F5 | 3e-77 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A2I4GGD8 | 1e-120 | A0A2I4GGD8_JUGRE; zinc finger CCCH domain-containing protein 15-like | ||||
STRING | XP_004167744.1 | 1e-117 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-77 | C3H family protein |