PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876715.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 294aa    MW: 33088.5 Da    PI: 9.2766
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876715.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH504.7e-16210235126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tG C+yGd+C+FaHg
  XP_015876715.1 210 FKTELCNKWQETGACPYGDQCQFAHG 235
                     79***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-19205242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-11206241IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-9209236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.539209237IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-13210235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7243277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-10243274IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013247274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.333247275IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
SLPIAPYQVD SDSETSSSSA AAIQKLHLVH SLLTQDRQEM VNRHNLCLTR LREASEEADS  60
LRRENTHLRT VNRELNKHLN LLIQAAVQKQ LDASTSEYTG LIRTLNTFRN RARALDNEEV  120
SDESPTSVIE NGMVENVEGG RSSLPKSISV RSSGYLKMGT HAVASNGGRA RSSTRSRAAT  180
PQTVKQKVCV SGRKKEEVPL ELDVYKQGMF KTELCNKWQE TGACPYGDQC QFAHGIEELR  240
PVLRHPRYKT EVCRMVIAGV PCPYGHRCHF RHALTDQERF MIPLKRRPSA PLDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21210272466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876715.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876715.10.0zinc finger CCCH domain-containing protein 15, partial
SwissprotQ9C9F53e-77C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2I4GGD81e-120A0A2I4GGD8_JUGRE; zinc finger CCCH domain-containing protein 15-like
STRINGXP_004167744.11e-117(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-77C3H family protein