PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876673.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 532aa    MW: 59490.2 Da    PI: 6.5201
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.5e-52221491128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv +yLk+kv gk++++ ++i+evdiyk+ePwdL  k ++k++++e+yfFs  dkky +g r nrat++gyWkatg+d++v+
  XP_015876673.1  22 LAPGFRFHPTDEELVIYYLKRKVCGKTFRF-NAISEVDIYKSEPWDLAgKsSLKSRDQEYYFFSALDKKYGNGARMNRATSQGYWKATGNDRPVK 115
                     579*************************99.89**************85347888999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++++vg+kktLvf++grap+g++t+Wvmheyrl
  XP_015876673.1 116 H-DSRTVGMKKTLVFHSGRAPDGKRTNWVMHEYRL 149
                     *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-5919173IPR003441NAC domain
PROSITE profilePS5100557.26222173IPR003441NAC domain
PfamPF023651.2E-2624149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MGLEAAAGSG GEAKTQTAPT ALAPGFRFHP TDEELVIYYL KRKVCGKTFR FNAISEVDIY  60
KSEPWDLAGK SSLKSRDQEY YFFSALDKKY GNGARMNRAT SQGYWKATGN DRPVKHDSRT  120
VGMKKTLVFH SGRAPDGKRT NWVMHEYRLV EEELEKTVGL TQDAYVLCRV FHKSNIGPPS  180
GQRYAPFIEE EWDDNKSAVV PGMETLDEAV AGRGQDACIE GNSERKCTED ACVEGNSQRK  240
CTVETAPDAN AGRSRENAPD ANAGRHRENA PDANGGRHRE NAPDANAGRN RENGLDANAG  300
RNSDQDTQSI DKAPPNALDL PMDNKNVLSV CKVESVNEPP LSCVVNREER LEDYQSPGVD  360
DEQPLPSVEN RLTLPLQKYK RRRHSDLISD YSNVSENSSR TTQDRCSSTT TTAATAMPIL  420
RKTPSTKNFL SALVEYSLLE SIERKELVPV PPPELNAANH NSSMPPSCMK FIQDLQNEIL  480
KISRERETLK FEMTSAQAMI NILQSKIDLL HKENEDLHRE NNDLKRISRH FK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-482217515170Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876673.10.0NAC domain containing protein 52 isoform X2
TrEMBLA0A2P5FLD40.0A0A2P5FLD4_TREOI; NAC domain containing protein
STRINGXP_010090441.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-105NAC domain containing protein 52