PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015876671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 395aa MW: 44137.3 Da PI: 7.3025 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00096 | 166 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_015876671.1 166 YECKTCNRTFPSFQALGGHRASH 188 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.6 | 9.4e-05 | 260 | 282 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F++ L H+r+H XP_015876671.1 260 HECSICGTEFTSGQALGGHMRRH 282 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.38E-5 | 164 | 192 | No hit | No description |
Pfam | PF13912 | 3.8E-13 | 165 | 190 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 166 | 188 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.554 | 166 | 193 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 168 | 188 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.21E-6 | 256 | 283 | No hit | No description |
Pfam | PF13912 | 9.5E-12 | 259 | 284 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.743 | 260 | 282 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 260 | 282 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 262 | 282 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MEAAAAEAAI AAAQEEVILM GSQEHTHLIA KGKRTKRQRP QSPIPFPTTT NSSTGDGGGS 60 VGDPENTNNI LTNTKNSNIN HFSPSSSSPE PELFQDSTEE EEDMANCLIL LAQGQSRGAT 120 TMTMSSSPPK QQIIANMADH EGNNYKYNSR RFLETGKGAS SGYYVYECKT CNRTFPSFQA 180 LGGHRASHKK PRAAAMAEEK KLFGLVSDDE EMTSFKNNNN NNNNVSSVLS LQLSHHNHHH 240 RSLYGNHNNN NNNSNKNKVH ECSICGTEFT SGQALGGHMR RHRAPVGTNT TLSLTPMAVE 300 HVDHHHHHNH QQQQQQQQQQ QQQQQQQQQQ QPKKPRTVLS LDLDLNLPAP EDDHREHKFS 360 FVTQQQQQQQ KQQQQQQQQQ SSMVFSAPAL VDCHY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 331 | 337 | PKKPRTV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015876671.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876671.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A1Q3CDB3 | 1e-112 | A0A1Q3CDB3_CEPFO; Zf-C2H2_6 domain-containing protein | ||||
STRING | EOY18851 | 1e-104 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-67 | C2H2 family protein |