PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876435.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27797.5 Da    PI: 9.9949
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312473150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_015876435.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                    79***********************************************8 PP
2K-box111.49.1e-37911883100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +s++ s++ea+a+ +qqe+akL+++i + q+++R +lGe+L+sLslk+L++Le +Le++++kiRskKnell+++ie++qk+e +l+++n+ Lr+k
  XP_015876435.1  91 SSNTGSVSEANAQFYQQEAAKLRSQIGSVQKQNREMLGECLSSLSLKDLKNLEGKLERGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 185
                     3445559**************************************************************************************** PP

           K-box  98 lee 100
                     ++e
  XP_015876435.1 186 IAE 188
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-411675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.6691676IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-331789IPR002100Transcription factor, MADS-box
CDDcd002651.80E-441793No hitNo description
PRINTSPR004044.4E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003199.1E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-335374IPR002100Transcription factor, MADS-box
PfamPF014863.2E-27100186IPR002487Transcription factor, K-box
PROSITE profilePS5129714.946102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAYQNKSMSV SPQRKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKST IERYKKACSD SSNTGSVSEA NAQFYQQEAA KLRSQIGSVQ  120
KQNREMLGEC LSSLSLKDLK NLEGKLERGI SKIRSKKNEL LFAEIEYMQK REIDLHNNNQ  180
LLRAKIAENE RNQQNISMMA GGGGGGNYEI MQSQPFDSRN YFQVNALQPN NEYSRQDQMA  240
LQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-201684169Myocyte-specific enhancer factor 2B
1tqe_Q1e-201684169Myocyte-specific enhancer factor 2B
1tqe_R1e-201684169Myocyte-specific enhancer factor 2B
1tqe_S1e-201684169Myocyte-specific enhancer factor 2B
5f28_A1e-201684169MEF2C
5f28_B1e-201684169MEF2C
5f28_C1e-201684169MEF2C
5f28_D1e-201684169MEF2C
6c9l_A1e-201684169Myocyte-specific enhancer factor 2B
6c9l_B1e-201684169Myocyte-specific enhancer factor 2B
6c9l_C1e-201684169Myocyte-specific enhancer factor 2B
6c9l_D1e-201684169Myocyte-specific enhancer factor 2B
6c9l_E1e-201684169Myocyte-specific enhancer factor 2B
6c9l_F1e-201684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876435.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876427.11e-178floral homeotic protein AGAMOUS isoform X3
RefseqXP_015876435.11e-178floral homeotic protein AGAMOUS isoform X4
SwissprotQ408721e-136AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLG9JJR21e-147G9JJR2_9ROSI; MADS1
STRINGXP_008225406.11e-147(Prunus mume)
STRINGEMJ131241e-147(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-126MIKC_MADS family protein