PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876430.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 504aa    MW: 54524.8 Da    PI: 7.3028
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876430.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.14.1e-17113213186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm................rergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                     +W++  + +L++a++e+ ++l+rg+l++ +Weev++ +                + +   +s +qCk+k++nl+kryk + ++++++ s ++s++
  XP_015876430.1 113 EWSDMAIACLLDAYTEKFNQLSRGNLRGRDWEEVAEMVsercisgggekhgsssSNKSTYKSVEQCKNKIDNLKKRYKVELQRMSNG-SLTVSHW 206
                     5****************************************************9999999*************************99.78888** PP

        trihelix  80 pyfdqle 86 
                      +f+++e
  XP_015876430.1 207 HWFKKIE 213
                     *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-17111215No hitNo description
Gene3DG3DSA:3.40.1160.101.5E-64257497IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536337.59E-53264497IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.748264498IPR015963Uridylate kinase, bacteria
CDDcd042542.21E-109267498No hitNo description
PfamPF006962.1E-20268477IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MASSEDFSLI DDDSHLHTPT RHHHTDSGNG DYFPPPPFTE DSDPNISGSA VGAPATSEQS  60
PYYCKKLKSC SSAGNNSGKN HNNNNNNEGE SSGGTENYRR GGGGGDYRKD REEWSDMAIA  120
CLLDAYTEKF NQLSRGNLRG RDWEEVAEMV SERCISGGGE KHGSSSSNKS TYKSVEQCKN  180
KIDNLKKRYK VELQRMSNGS LTVSHWHWFK KIEAIVGSSV AVKSGSDEER SVGVHSNVAR  240
QSKRYMSSNA AFSNNAKSKP VTNLKWRRVV FKISGAALVG DCQNIDPKVA MQIAREVATA  300
CRLGVEVAIV VGGCNLFCGD SWVSTTGLDR STAYQIGMMA TVMNSVLLQS ALEKMGVQTR  360
VQSAFTMLEV SEPYNRQRAI RHLEKGRVVI FGGVGAGAGN YLFTTDIAAA LRASELNADV  420
VLKGTNISGV YGCHSGNNSV TADHISYGEF VSRGITSMDS MAVTYCEENG IPVVIFNLLE  480
SGNISRALCG DQVGILIDQA GRIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A6e-592584971239Uridylate kinase
3ek5_B6e-592584971239Uridylate kinase
3ek5_C6e-592584971239Uridylate kinase
3ek5_D6e-592584971239Uridylate kinase
3ek5_E6e-592584971239Uridylate kinase
3ek5_F6e-592584971239Uridylate kinase
3ek6_A6e-592584971239Uridylate kinase
3ek6_B6e-592584971239Uridylate kinase
3ek6_C6e-592584971239Uridylate kinase
3ek6_D6e-592584971239Uridylate kinase
3ek6_E6e-592584971239Uridylate kinase
3ek6_F6e-592584971239Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876430.10.0uncharacterized protein LOC107413082
TrEMBLA0A251QGN80.0A0A251QGN8_PRUPE; Uncharacterized protein
STRINGXP_008232036.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-159Trihelix family protein