PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876226.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SRS
Protein Properties Length: 313aa    MW: 33902.6 Da    PI: 7.9387
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876226.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702150.61.1e-461442974138
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel..kskkqsalsst 89 
                      + +C+dCGn+akkdC ++RCRtCCk+rgfdC+thv+stWvpa++rrer++++   ss    +        +++  kr+r l  ++  +++ s++
  XP_015876226.1 144 SSRACKDCGNRAKKDCGFKRCRTCCKARGFDCSTHVRSTWVPASRRRERHEMMVLGSSAGGGAGggdgssgSSSGVKRPRILvpSQIGNNSGSHA 238
                     4568*********************************************8887766555544446778777888899999885544456677788 PP

          DUF702  90 klssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsi 138
                     ++s+ ++++++++            lP +v+s+avfrc rv+++++ge+elaYq++  i
  XP_015876226.1 239 STSNVNTPRSFDFGYahqdasfkqsLPGKVRSSAVFRCHRVTAISNGEAELAYQATLCI 297
                     8888888888887767789999999******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.9E-44146297IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.3E-25148189IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.9E-13264297IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MLGLRDVLFI APQNQTTINI SSSSSDHNHH HHQTNIPLPS STSLGVGLGI FPLLTATPCV  60
TTPPPPPPPQ PNPNINHPSS CNPDAYHYWS LKKFQELNSS KQDDHHHQNQ LLLGPNNNGD  120
GDGYDHEREE EAQMVESDEG GNTSSRACKD CGNRAKKDCG FKRCRTCCKA RGFDCSTHVR  180
STWVPASRRR ERHEMMVLGS SAGGGAGGGD GSSGSSSGVK RPRILVPSQI GNNSGSHAST  240
SNVNTPRSFD FGYAHQDASF KQSLPGKVRS SAVFRCHRVT AISNGEAELA YQATLCIWKV  300
VQVEGMETLL HQL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024927110.10.0protein LATERAL ROOT PRIMORDIUM 1-like isoform X2
TrEMBLA0A2I4GZU29e-76A0A2I4GZU2_JUGRE; protein LATERAL ROOT PRIMORDIUM 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.28e-36Lateral root primordium (LRP) protein-related