PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876225.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SRS
Protein Properties Length: 352aa    MW: 37818.6 Da    PI: 8.1037
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702186.78.8e-581443134154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel..kskkqsalsst 89 
                      + +C+dCGn+akkdC ++RCRtCCk+rgfdC+thv+stWvpa++rrer++++   ss    +        +++  kr+r l  ++  +++ s++
  XP_015876225.1 144 SSRACKDCGNRAKKDCGFKRCRTCCKARGFDCSTHVRSTWVPASRRRERHEMMVLGSSAGGGAGggdgssgSSSGVKRPRILvpSQIGNNSGSHA 238
                     4568*********************************************8887766555544446778777888899999885544456677788 PP

          DUF702  90 klssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     ++s+ ++++++++            lP +v+s+avfrc rv+++++ge+elaYq++v i+Ghvf+G+Lyd+G++e
  XP_015876225.1 239 STSNVNTPRSFDFGYahqdasfkqsLPGKVRSSAVFRCHRVTAISNGEAELAYQATVRISGHVFRGYLYDHGVDE 313
                     8888888888887767789999999***********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.6E-55146312IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.4E-25148189IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.8E-25264311IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MLGLRDVLFI APQNQTTINI SSSSSDHNHH HHQTNIPLPS STSLGVGLGI FPLLTATPCV  60
TTPPPPPPPQ PNPNINHPSS CNPDAYHYWS LKKFQELNSS KQDDHHHQNQ LLLGPNNNGD  120
GDGYDHEREE EAQMVESDEG GNTSSRACKD CGNRAKKDCG FKRCRTCCKA RGFDCSTHVR  180
STWVPASRRR ERHEMMVLGS SAGGGAGGGD GSSGSSSGVK RPRILVPSQI GNNSGSHAST  240
SNVNTPRSFD FGYAHQDASF KQSLPGKVRS SAVFRCHRVT AISNGEAELA YQATVRISGH  300
VFRGYLYDHG VDEKSAFPCI SALHLEGSTS RRNGDSSSPV VNPSSTHPAS AT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876225.10.0protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
TrEMBLA0A2I4GZU21e-102A0A2I4GZU2_JUGRE; protein LATERAL ROOT PRIMORDIUM 1
STRINGXP_010067729.16e-91(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.25e-56Lateral root primordium (LRP) protein-related