PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015876155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB | ||||||||
Protein Properties | Length: 557aa MW: 60498.1 Da PI: 5.1463 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 38 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l XP_015876155.1 38 KGPWTSSEDAILVEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 85 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50 | 7e-16 | 91 | 134 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ l++++++++G++ W++ a++++ gRt++++k++w++ XP_015876155.1 91 KGAFTADEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 134 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.936 | 33 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-30 | 37 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 37 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 38 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-24 | 39 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.45E-12 | 40 | 85 | No hit | No description |
PROSITE profile | PS51294 | 25.829 | 86 | 140 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 90 | 138 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 91 | 134 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 93 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.85E-12 | 93 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MSRTTNESED GVLSKYQSES PLVDESNGGH SGGAVLKKGP WTSSEDAILV EYVKKHGEGN 60 WNAVQKHSGL FRCGKSCRLR WANHLRPNLK KGAFTADEER LIIELHAKMG NKWARMAAHL 120 PGRTDNEIKN YWNTRIKRRQ RAGLPLYPPD LCLQAFQENP QSQNSGGISG GDGGHHDPLQ 180 ANSYEIPDVI FNGLKGNNDV LPYVSELSEI SANSMLIKGL GSSQYYSFMP PTIHQSKRLR 240 ESIDVFPNSS GSVRNGFSMY DQFQNDTCDK AVRSFGLSFP HDPDPSKSLL SFDVTQGSHS 300 LSNGNSSASK PTSGAVKLEL PSLQYPETDL GSWGSSPPPP LLESVDAFIQ SPPPVGAFES 360 DCPSPRNSGL LDALLHEAKT LGSGRNHSAE KSSNSSSITP GAMADNCTLN ICETEWEEYR 420 EPISPLCHST TSLFNECIST SGSSVDEPPH AETFPGSNVK LEPVDSDLVL DKERESTKQL 480 ALTRPDVLLA SDWLEQSSGC MKEQSIMTDA IATLLGDDLA TDYKHMVAGS STSSQGWGLG 540 SCAWNNMPAV CQMSDQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-32 | 36 | 139 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00348 | DAP | Transfer from AT3G11440 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015876155.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876153.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_015876154.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_015876155.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_024927801.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_024927802.1 | 0.0 | transcription factor MYB33 | ||||
TrEMBL | A0A2P5EMK2 | 0.0 | A0A2P5EMK2_TREOI; MYB transcription factor | ||||
STRING | XP_008231582.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-131 | myb domain protein 65 |