PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876122.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YC
Protein Properties Length: 293aa    MW: 31958.2 Da    PI: 5.0592
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.41.4e-175792498
           NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl div r
  XP_015876122.1  5 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDIVSR 79
                    8***********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.0E-17464IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-23579IPR009072Histone-fold
SuperFamilySSF471131.1E-191180IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSRKARIKKI MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNSLHL  60
KHCVQSYNVF DFLRDIVSRV PDYSHGHSDV GGDDRALPKR RKAAGDECIE SDEELRRSKM  120
LEISHGSSSG RGRGRGRGRG RGRGARAAER DTSHPETESD PCTSLPCSTK HNVNPGVSTH  180
NASDTKESLK EDMNIGDDAD PAVRNFDLNA DVNESANEKE DAKGAAAAAA LAATKSVAAS  240
SQAPSTEPTS ETKHEEYPGW SLSEMDHMAI DPLQLAHLGT RIDEDDEDYD EEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-185651575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132142RGRGRGRGRGR
2134143RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876122.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876122.10.0dr1-associated corepressor isoform X2
TrEMBLA0A2P5E9B41e-130A0A2P5E9B4_TREOI; Nuclear transcription factor Y subunit C
STRINGEMJ199001e-116(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-60nuclear factor Y, subunit C11