PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015876121.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NF-YC

Protein Properties

Length: 300aa MW: 32800.2 Da PI: 5.1725

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015876121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.5	1.7e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r XP_015876121.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.3E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.37E-20	4	89	IPR009072	Histone-fold
Pfam	PF00808	2.4E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQSYNVFDFL RDIVSRVPDY SHGHSDVGGD DRALPKRRKA AGDECIESDE 120 ELRRSKMLEI SHGSSSGRGR GRGRGRGRGR GARAAERDTS HPETESDPCT SLPCSTKHNV 180 NPGVSTHNAS DTKESLKEDM NIGDDADPAV RNFDLNADVN ESANEKEDAK GAAAAAALAA 240 TKSVAASSQA PSTEPTSETK HEEYPGWSLS EMDHMAIDPL QLAHLGTRID EDDEDYDEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-20	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	149	RGRGRGRGRGR
2	141	150	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015876121.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094155	6e-75	BT094155.1 Soybean clone JCVI-FLGm-18C10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015876121.1	0.0	dr1-associated corepressor isoform X1
TrEMBL	A0A2P5E9B4	1e-139	A0A2P5E9B4_TREOI; Nuclear transcription factor Y subunit C
STRING	EMJ19900	1e-125	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-69	nuclear factor Y, subunit C11