PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876096.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 343aa    MW: 37261.2 Da    PI: 8.7349
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021128150123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C++ Fs++  L  H++ H
  XP_015876096.1 128 FSCNFCKREFSTSQALGGHQNAH 150
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.19E-6125155No hitNo description
Gene3DG3DSA:3.30.160.605.5E-4126154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531128155IPR007087Zinc finger, C2H2
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEEIGGGETC PSEASSISAA SDGTTTPCQN HHAHNKKIMN NMKLKEKLLV KSSSDINDRV  60
ERQNPELSSR VLLDLKLCND ESLRGGSSSK LELNLFNSMN NQHVSSHANN NESSDETTRE  120
KRSESRVFSC NFCKREFSTS QALGGHQNAH KQERALAKRR QGMDVGAFGH PHFPYYPYSS  180
ISSHPLFGSF NRSIGVRMES MIHKPNAYQW PTQAGYRFNN HSGGGVGVGV GGVGWGRQAI  240
MNPQPSIDRL TLEGFQNNQI GGGGLGLAGT SASNNSSSSR IENTGAIRNL SVSTTTITTT  300
NNNIVSGSNM VTNRSTGSDF IRRSEAMKTD HADVPELDLS LKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876096.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876096.10.0zinc finger protein 3-like
TrEMBLA0A2N9IKW21e-96A0A2N9IKW2_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-19C2H2 family protein