PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876065.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 348aa    MW: 39241.8 Da    PI: 4.9437
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.86.1e-5561331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd+ v+
  XP_015876065.1   6 LPPGFRFHPTDEELVAYYLDRKITGRTIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRLVH 99 
                     79****************************.99**************95345556888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s  ++ vg+kktLv+y+grap+g +t+Wvmheyrl
  XP_015876065.1 100 S-LRRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                     9.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-633158IPR003441NAC domain
PROSITE profilePS5100560.1976158IPR003441NAC domain
PfamPF023651.5E-287133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKITG RTIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRLVHS LRRPVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLIHDSLCG STSSSLKDSY ALCRVFKKTM QIPKNSTACN NKKEDKSSKG  180
SSIAENASGI EISRGIGNED DNLNTSNDVE YPKFVSDTSS SDLTQGTPTA ETAMADDVNQ  240
APVANSDEAN SASNLYSLGV DCSSNLIQDM QMGNYGSLLH CQFGYPPLEL EDFPQINFGA  300
ETKPMKTESS TEDDMSYDKF RDYTNITVEE IFSLCCSQDN PIALSMQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-58115812165NO APICAL MERISTEM PROTEIN
1ut4_B6e-58115812165NO APICAL MERISTEM PROTEIN
1ut7_A6e-58115812165NO APICAL MERISTEM PROTEIN
1ut7_B6e-58115812165NO APICAL MERISTEM PROTEIN
3swm_A6e-58115815168NAC domain-containing protein 19
3swm_B6e-58115815168NAC domain-containing protein 19
3swm_C6e-58115815168NAC domain-containing protein 19
3swm_D6e-58115815168NAC domain-containing protein 19
3swp_A6e-58115815168NAC domain-containing protein 19
3swp_B6e-58115815168NAC domain-containing protein 19
3swp_C6e-58115815168NAC domain-containing protein 19
3swp_D6e-58115815168NAC domain-containing protein 19
4dul_A6e-58115812165NAC domain-containing protein 19
4dul_B6e-58115812165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876065.10.0NAC domain-containing protein 86
TrEMBLA0A2P5CMM21e-180A0A2P5CMM2_TREOI; NAC domain containing protein
STRINGXP_010092473.11e-175(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-107NAC domain containing protein 20