PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015876019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 412aa MW: 45623.7 Da PI: 7.2195 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 346 | 391 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + +++L +AveYIk+Lq XP_015876019.1 346 SIAERVRRTRISERMRKLQELVPSM----DKQTNTSDMLDLAVEYIKDLQ 391 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.57 | 340 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-16 | 343 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.00E-12 | 344 | 395 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.5E-15 | 345 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-13 | 346 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 346 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 412 aa Download sequence Send to blast |
MESDLQHHHL FGDHLQQQQQ MNSGLMRYRS APSSYFTSAM DREFCQQFFN RPASPETERI 60 FARFMNGGNG GDDTGNKVTG TETDQKTQFS TSMMNNETGV LEQQQQSNLN DYSSASQNFY 120 QPSSKPPLPN QSLPSGNEGS NYSVGMNQIP QMRTGSVNNS NLIRHSSSPA GLFASINIDN 180 GYQRVMGNYG VTNTNSTKEE AAISSANRLK NYNTAGGPPP LPSAGLMSPI AEMEDKNLAI 240 TNPDTGNYVT AGLPMPSWDD SASISDSITG LKRLRSLDDT KPFSALNKSE NQNVEVGARP 300 PTLLTHHLSL PKTSSEMAAI EKYLQFQDSV PCKIRAKRGC ATHPRSIAER VRRTRISERM 360 RKLQELVPSM DKQTNTSDML DLAVEYIKDL QEQVQTLSDK RAKCTCSNRV EQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015876019.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876019.1 | 0.0 | transcription factor bHLH122-like | ||||
TrEMBL | A0A2P5D8Z8 | 1e-179 | A0A2P5D8Z8_PARAD; Basic helix-loop-helix transcription factor | ||||
STRING | XP_008219331.1 | 1e-168 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4185 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-57 | bHLH family protein |