PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015876015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 560aa MW: 61292.3 Da PI: 6.7381 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.5e-15 | 172 | 231 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_015876015.1 172 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 231 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 47.1 | 6.1e-15 | 276 | 325 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_015876015.1 276 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 325 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.75E-17 | 172 | 241 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.33E-23 | 172 | 241 | No hit | No description |
Pfam | PF00847 | 7.3E-12 | 172 | 231 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.256 | 173 | 239 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-16 | 173 | 240 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-30 | 173 | 245 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 174 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 274 | 334 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.09E-24 | 274 | 333 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-18 | 275 | 333 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-32 | 275 | 339 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.375 | 275 | 333 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 276 | 325 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 315 | 335 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 560 aa Download sequence Send to blast |
MGSMNSNNWL SFPLSPTHAS LPSHLHTSQS HQFSLGLVND SMDIPFQAQE WNLINSHGNE 60 IPKVADFLGV SKSENQSDLV AYGEIQASDS DYLFPNNSIV PVQNTVVAAA AAASNTYDFQ 120 ENGSNLQSLT LSMGSGKAGS STCETSAGGD NSSNTMEVAP RRTLDTFGQR TSIYRGVTRH 180 RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKAAR AYDLAALKYW GTSTTTNFPI 240 SNYEKELEEM KHMTRQEFVA SIRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD 300 LYLGTFSTEE EAAEAYDIAA IKFRGLNAVT NFDMNRYDVK SILESNTLPI GGGAAKRLKE 360 AQAMESSRKR DEMLALSSTF PYGSSSSSSR LQAYPAVIQQ QQQFEQQPQP MLSLQNHHEL 420 SHYAQDPSFH QNYIQTQLQL HQQSAAASSY SNPHFYNSYI QNHPALLQGL MDMGGSSSSH 480 VMDNNNGGSS TGSYSSRGYL ENGMGMGLNS TSGNAEELAL VKVDYDMPPA PSGGYGGWSG 540 GGSGQGSSNA GGGVFTMWTD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015876015.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876015.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2K2BA87 | 0.0 | A0A2K2BA87_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s05580.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4942 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |