PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015876005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26479.3 Da PI: 9.8331 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.3 | 2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL +LCda+v+++++sstgkl+e++s XP_015876005.1 9 KRIENTTNRQVTYSKRRNGLFKKANELTILCDAKVSILMLSSTGKLHEFIS 59 79***********************************************86 PP | |||||||
2 | K-box | 96.2 | 5.2e-32 | 71 | 168 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq+s+g++l+++++e++q++l+kLk+ +++L++++R+++G++L++Ls+keL Leq++e+++k iR++K+++l +qie++ kk k+++++nk+L XP_015876005.1 71 YQRSEGVDLWNSHYERMQENLKKLKEVNRSLRKQIRQRMGDCLNELSFKELLGLEQDMEEAVKVIRERKYKVLSNQIETTNKKLKQARQINKNLL 165 79999****************************************************************************************98 PP K-box 96 kkl 98 ++ XP_015876005.1 166 IEF 168 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.735 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.07E-39 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.76E-36 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.9E-21 | 82 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.825 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MARGKIQIKR IENTTNRQVT YSKRRNGLFK KANELTILCD AKVSILMLSS TGKLHEFISP 60 STTTKQIYDQ YQRSEGVDLW NSHYERMQEN LKKLKEVNRS LRKQIRQRMG DCLNELSFKE 120 LLGLEQDMEE AVKVIRERKY KVLSNQIETT NKKLKQARQI NKNLLIEFDA REDDPHYGLV 180 DNRGDYESVI GYSTEIVPRM FALRLQPNQP NLHSGTGSDL IAYPLLE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015876005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876005.1 | 1e-168 | floral homeotic protein DEFICIENS-like | ||||
Refseq | XP_015884917.1 | 1e-168 | floral homeotic protein DEFICIENS-like | ||||
Swissprot | E0CPH4 | 1e-116 | AP3_VITVI; Agamous-like MADS-box protein AP3 | ||||
TrEMBL | A0A061FCW9 | 1e-118 | A0A061FCW9_THECC; Floral homeotic protein DEFICIENS isoform 1 | ||||
STRING | EOY14906 | 1e-119 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-99 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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