PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875985.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 357aa    MW: 40315.9 Da    PI: 7.9747
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05195214120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_015875985.1 195 FSCPLCFKTFNRYNNMQMHM 214
                     89*****************9 PP
2zf-C2H214.50.0001279301123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_015875985.1 279 FMCRKCGKAFAVRGDWRTHEKNC 301
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66195222IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5195214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.61195217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-6260299No hitNo description
Gene3DG3DSA:3.30.160.609.6E-6275299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808279299IPR007087Zinc finger, C2H2
SMARTSM0035549279299IPR015880Zinc finger, C2H2-like
SMARTSM00355190305328IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNDPYSNYFN GFLNLNSLPS FSSFTSSSNN PYFQSPNYDY NMICYNSIAI DNNTNTSFNH  60
FGSSSTSPPS PPLKEALPLL SLSPTRHDHN KNQQDHTNYL SATYEGDKIK MMINNKEKEE  120
SLHSSSSVDE TVTVALHLGL PSPSSADLVS RLSSTEISSD KEDVSVTSGC HSSTLNKGQY  180
WIPTPAQILI GPTQFSCPLC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP  240
CYCCAPGCRN NIDHPRSKPL KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV RGDWRTHEKN  300
CGKLWYCTCG SDFKHKRSLK DHIKAFGHGH SAYGIDCFEE EDEAASEIEQ DNNDTNR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875985.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-139ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2N9I4U41e-176A0A2N9I4U4_FAGSY; Uncharacterized protein
STRINGVIT_06s0004g01870.t011e-175(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-130C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]