PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875946.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 301aa    MW: 31565.6 Da    PI: 9.4283
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08106131227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ f     Ck+Gd+C+FaHg+
  XP_015875946.1 106 KTRLCNKFNSAEGCKFGDKCHFAHGE 131
                     8***********************96 PP
2zf-CCCH35.71.5e-11268292126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +fa+ G C +G+rC+FaHg
  XP_015875946.1 268 FKTKLCENFAK-GSCTFGERCHFAHG 292
                     69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-63863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.84562No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-14102136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-8103135IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-4104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629104132IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.19E-15166246IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-16173245IPR004088K Homology domain, type 1
SMARTSM003222.0E-11174244IPR004087K Homology domain
PROSITE profilePS5008413.858175239IPR004088K Homology domain, type 1
CDDcd001051.40E-13177243No hitNo description
PfamPF000135.1E-11177241IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.8E-16265299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718267294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8267297IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7267293IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9268292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDFGGGRKRG RNEAALNGNG GLKKSKSELE SFSSGIGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGIKA VSQMINLGVN QTLPPAARNS AVPPSFPDGS SPPAVKTRLC NKFNSAEGCK  120
FGDKCHFAHG EWELGKPNAP SYEDPRAMGP LPGRMGGRIE PPQQSHGAAA SFGASSTCKV  180
SVDASLAGAI IGKNGVNSKQ ICRVTGAKLS IRDHESDPNL RNIELEGSFD QIKQANAMVR  240
ELIANVGSGA GNPMKNHSMG GSGPGNNFKT KLCENFAKGS CTFGERCHFA HGAEELRKPG  300
I
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875946.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875946.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-117C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2C9UEI60.0A0A2C9UEI6_MANES; Uncharacterized protein
STRINGcassava4.1_012715m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-57C3H family protein